Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07370 and ABIE41_RS07375 are separated by 39 nucleotides ABIE41_RS07375 and ABIE41_RS07380 are separated by 29 nucleotides ABIE41_RS07380 and ABIE41_RS07385 are separated by 274 nucleotides ABIE41_RS07385 and ABIE41_RS07390 are separated by 59 nucleotides
ABIE41_RS07370: ABIE41_RS07370 - hypothetical protein, at 1,516,173 to 1,516,664
_RS07370
ABIE41_RS07375: ABIE41_RS07375 - hypothetical protein, at 1,516,704 to 1,517,348
_RS07375
ABIE41_RS07380: ABIE41_RS07380 - hypothetical protein, at 1,517,378 to 1,517,608
_RS07380
ABIE41_RS07385: ABIE41_RS07385 - hypothetical protein, at 1,517,883 to 1,518,263
_RS07385
ABIE41_RS07390: ABIE41_RS07390 - helix-turn-helix transcriptional regulator, at 1,518,323 to 1,518,628
_RS07390
Position (kb) 1517
1518 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1516.415 kb on + strand, within ABIE41_RS07370 at 1516.416 kb on - strand, within ABIE41_RS07370 at 1516.417 kb on + strand, within ABIE41_RS07370 at 1516.418 kb on - strand, within ABIE41_RS07370 at 1516.418 kb on - strand, within ABIE41_RS07370 at 1516.445 kb on + strand, within ABIE41_RS07370 at 1516.446 kb on - strand, within ABIE41_RS07370 at 1516.488 kb on + strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.489 kb on - strand, within ABIE41_RS07370 at 1516.563 kb on + strand, within ABIE41_RS07370 at 1516.563 kb on + strand, within ABIE41_RS07370 at 1516.563 kb on + strand, within ABIE41_RS07370 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.071 kb on + strand, within ABIE41_RS07375 at 1517.072 kb on - strand, within ABIE41_RS07375 at 1517.072 kb on - strand, within ABIE41_RS07375 at 1517.072 kb on - strand, within ABIE41_RS07375 at 1517.072 kb on - strand, within ABIE41_RS07375 at 1517.072 kb on - strand, within ABIE41_RS07375 at 1517.193 kb on + strand, within ABIE41_RS07375 at 1517.193 kb on + strand, within ABIE41_RS07375 at 1517.194 kb on - strand, within ABIE41_RS07375 at 1517.570 kb on + strand, within ABIE41_RS07380 at 1517.577 kb on + strand, within ABIE41_RS07380 at 1517.711 kb on + strand at 1517.711 kb on + strand at 1517.711 kb on + strand at 1517.711 kb on + strand at 1517.711 kb on + strand at 1517.781 kb on + strand at 1517.950 kb on + strand, within ABIE41_RS07385 at 1517.950 kb on + strand, within ABIE41_RS07385 at 1517.995 kb on + strand, within ABIE41_RS07385 at 1518.194 kb on - strand, within ABIE41_RS07385 at 1518.194 kb on - strand, within ABIE41_RS07385 at 1518.194 kb on - strand, within ABIE41_RS07385 at 1518.595 kb on + strand, within ABIE41_RS07390 at 1518.595 kb on + strand, within ABIE41_RS07390 at 1518.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 1,516,415 + ABIE41_RS07370 0.49 -0.9 1,516,416 - ABIE41_RS07370 0.49 -0.3 1,516,417 + ABIE41_RS07370 0.50 +0.5 1,516,418 - ABIE41_RS07370 0.50 +1.0 1,516,418 - ABIE41_RS07370 0.50 -0.4 1,516,445 + ABIE41_RS07370 0.55 -0.7 1,516,446 - ABIE41_RS07370 0.55 -0.1 1,516,488 + ABIE41_RS07370 0.64 -1.5 1,516,489 - ABIE41_RS07370 0.64 -0.2 1,516,489 - ABIE41_RS07370 0.64 -1.1 1,516,489 - ABIE41_RS07370 0.64 +1.0 1,516,489 - ABIE41_RS07370 0.64 -0.4 1,516,489 - ABIE41_RS07370 0.64 -0.3 1,516,489 - ABIE41_RS07370 0.64 -0.3 1,516,489 - ABIE41_RS07370 0.64 +0.1 1,516,563 + ABIE41_RS07370 0.79 -0.3 1,516,563 + ABIE41_RS07370 0.79 -1.1 1,516,563 + ABIE41_RS07370 0.79 -0.2 1,517,071 + ABIE41_RS07375 0.57 -0.8 1,517,071 + ABIE41_RS07375 0.57 -0.2 1,517,071 + ABIE41_RS07375 0.57 +0.2 1,517,071 + ABIE41_RS07375 0.57 -0.6 1,517,071 + ABIE41_RS07375 0.57 +0.4 1,517,071 + ABIE41_RS07375 0.57 -1.4 1,517,071 + ABIE41_RS07375 0.57 -0.8 1,517,071 + ABIE41_RS07375 0.57 +0.3 1,517,072 - ABIE41_RS07375 0.57 -0.3 1,517,072 - ABIE41_RS07375 0.57 -1.4 1,517,072 - ABIE41_RS07375 0.57 -0.4 1,517,072 - ABIE41_RS07375 0.57 -1.1 1,517,072 - ABIE41_RS07375 0.57 -0.9 1,517,193 + ABIE41_RS07375 0.76 -1.1 1,517,193 + ABIE41_RS07375 0.76 -0.2 1,517,194 - ABIE41_RS07375 0.76 +1.7 1,517,570 + ABIE41_RS07380 0.83 +1.2 1,517,577 + ABIE41_RS07380 0.86 +0.5 1,517,711 + -0.1 1,517,711 + -1.3 1,517,711 + +0.4 1,517,711 + +0.1 1,517,711 + -0.1 1,517,781 + +0.1 1,517,950 + ABIE41_RS07385 0.18 -0.2 1,517,950 + ABIE41_RS07385 0.18 -3.1 1,517,995 + ABIE41_RS07385 0.29 -0.2 1,518,194 - ABIE41_RS07385 0.82 -1.9 1,518,194 - ABIE41_RS07385 0.82 +0.2 1,518,194 - ABIE41_RS07385 0.82 -0.2 1,518,595 + ABIE41_RS07390 0.89 +0.3 1,518,595 + ABIE41_RS07390 0.89 +0.0 1,518,604 + +0.6
Or see this region's nucleotide sequence