Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06075

Experiment: Ying_AminoAcid20 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06070 and ABIE41_RS06075 are separated by 91 nucleotidesABIE41_RS06075 and ABIE41_RS06080 are separated by 113 nucleotides ABIE41_RS06070: ABIE41_RS06070 - calcium:proton antiporter, at 1,253,713 to 1,254,864 _RS06070 ABIE41_RS06075: ABIE41_RS06075 - DUF4287 domain-containing protein, at 1,254,956 to 1,255,168 _RS06075 ABIE41_RS06080: ABIE41_RS06080 - HWE histidine kinase domain-containing protein, at 1,255,282 to 1,256,250 _RS06080 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1254.103 kb on + strand, within ABIE41_RS06070at 1254.103 kb on + strand, within ABIE41_RS06070at 1254.104 kb on - strand, within ABIE41_RS06070at 1254.104 kb on - strand, within ABIE41_RS06070at 1254.104 kb on - strand, within ABIE41_RS06070at 1254.128 kb on - strand, within ABIE41_RS06070at 1254.128 kb on - strand, within ABIE41_RS06070at 1254.128 kb on - strand, within ABIE41_RS06070at 1254.253 kb on + strand, within ABIE41_RS06070at 1254.253 kb on + strand, within ABIE41_RS06070at 1254.254 kb on - strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.735 kb on + strand, within ABIE41_RS06070at 1254.736 kb on - strand, within ABIE41_RS06070at 1254.736 kb on - strand, within ABIE41_RS06070at 1254.827 kb on + strandat 1254.828 kb on - strandat 1254.828 kb on - strandat 1254.989 kb on + strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1254.990 kb on - strand, within ABIE41_RS06075at 1255.013 kb on + strand, within ABIE41_RS06075at 1255.014 kb on - strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.072 kb on + strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.073 kb on - strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.142 kb on + strand, within ABIE41_RS06075at 1255.143 kb on - strand, within ABIE41_RS06075at 1255.343 kb on + strandat 1255.530 kb on - strand, within ABIE41_RS06080at 1255.530 kb on - strand, within ABIE41_RS06080at 1255.530 kb on - strand, within ABIE41_RS06080at 1255.530 kb on - strand, within ABIE41_RS06080at 1255.909 kb on + strand, within ABIE41_RS06080at 1255.909 kb on + strand, within ABIE41_RS06080at 1255.909 kb on + strand, within ABIE41_RS06080at 1255.910 kb on - strand, within ABIE41_RS06080at 1255.910 kb on - strand, within ABIE41_RS06080at 1255.910 kb on - strand, within ABIE41_RS06080at 1255.968 kb on - strand, within ABIE41_RS06080

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2
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1,254,103 + ABIE41_RS06070 0.34 -0.9
1,254,103 + ABIE41_RS06070 0.34 -0.8
1,254,104 - ABIE41_RS06070 0.34 -2.8
1,254,104 - ABIE41_RS06070 0.34 -0.2
1,254,104 - ABIE41_RS06070 0.34 -2.9
1,254,128 - ABIE41_RS06070 0.36 +1.1
1,254,128 - ABIE41_RS06070 0.36 +0.6
1,254,128 - ABIE41_RS06070 0.36 +0.9
1,254,253 + ABIE41_RS06070 0.47 +0.9
1,254,253 + ABIE41_RS06070 0.47 +0.4
1,254,254 - ABIE41_RS06070 0.47 +1.1
1,254,735 + ABIE41_RS06070 0.89 +0.0
1,254,735 + ABIE41_RS06070 0.89 +0.1
1,254,735 + ABIE41_RS06070 0.89 -0.0
1,254,735 + ABIE41_RS06070 0.89 -0.4
1,254,736 - ABIE41_RS06070 0.89 +1.3
1,254,736 - ABIE41_RS06070 0.89 +0.4
1,254,827 + -1.8
1,254,828 - +0.4
1,254,828 - +0.2
1,254,989 + ABIE41_RS06075 0.15 -1.0
1,254,990 - ABIE41_RS06075 0.16 -0.4
1,254,990 - ABIE41_RS06075 0.16 -1.1
1,254,990 - ABIE41_RS06075 0.16 -0.8
1,254,990 - ABIE41_RS06075 0.16 +1.0
1,255,013 + ABIE41_RS06075 0.27 +1.1
1,255,014 - ABIE41_RS06075 0.27 +0.6
1,255,072 + ABIE41_RS06075 0.54 -0.5
1,255,072 + ABIE41_RS06075 0.54 +0.3
1,255,072 + ABIE41_RS06075 0.54 -1.3
1,255,072 + ABIE41_RS06075 0.54 +0.5
1,255,072 + ABIE41_RS06075 0.54 -1.5
1,255,072 + ABIE41_RS06075 0.54 -0.2
1,255,072 + ABIE41_RS06075 0.54 -0.4
1,255,073 - ABIE41_RS06075 0.55 +0.3
1,255,073 - ABIE41_RS06075 0.55 -0.1
1,255,073 - ABIE41_RS06075 0.55 +0.7
1,255,073 - ABIE41_RS06075 0.55 -0.6
1,255,142 + ABIE41_RS06075 0.87 +0.8
1,255,142 + ABIE41_RS06075 0.87 +0.1
1,255,142 + ABIE41_RS06075 0.87 +0.2
1,255,142 + ABIE41_RS06075 0.87 +0.9
1,255,142 + ABIE41_RS06075 0.87 -0.7
1,255,142 + ABIE41_RS06075 0.87 -0.6
1,255,142 + ABIE41_RS06075 0.87 +2.5
1,255,143 - ABIE41_RS06075 0.88 -0.2
1,255,343 + -0.2
1,255,530 - ABIE41_RS06080 0.26 -0.0
1,255,530 - ABIE41_RS06080 0.26 -1.5
1,255,530 - ABIE41_RS06080 0.26 +0.3
1,255,530 - ABIE41_RS06080 0.26 +1.3
1,255,909 + ABIE41_RS06080 0.65 -0.1
1,255,909 + ABIE41_RS06080 0.65 -0.4
1,255,909 + ABIE41_RS06080 0.65 -1.1
1,255,910 - ABIE41_RS06080 0.65 -1.8
1,255,910 - ABIE41_RS06080 0.65 +0.7
1,255,910 - ABIE41_RS06080 0.65 -2.0
1,255,968 - ABIE41_RS06080 0.71 -0.6

Or see this region's nucleotide sequence