Strain Fitness in Escherichia coli ECRC101 around MCAODC_22620

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmcrA and MCAODC_22615 are separated by 44 nucleotidesMCAODC_22615 and MCAODC_22620 are separated by 222 nucleotidesMCAODC_22620 and MCAODC_22625 are separated by 356 nucleotidesMCAODC_22625 and MCAODC_22630 are separated by 23 nucleotides MCAODC_22610: mcrA - HNH endonuclease, at 1,281,324 to 1,281,689 mcrA MCAODC_22615: MCAODC_22615 - hypothetical protein, at 1,281,734 to 1,281,823 _22615 MCAODC_22620: MCAODC_22620 - hypothetical protein, at 1,282,046 to 1,282,186 _22620 MCAODC_22625: MCAODC_22625 - hypothetical protein, at 1,282,543 to 1,282,767 _22625 MCAODC_22630: MCAODC_22630 - lysis protein, at 1,282,791 to 1,283,258 _22630 Position (kb) 1282 1283Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1281.823 kb on + strandat 1281.906 kb on + strandat 1281.910 kb on + strandat 1281.910 kb on + strandat 1281.910 kb on + strandat 1281.910 kb on + strandat 1281.911 kb on - strandat 1282.043 kb on - strandat 1282.048 kb on - strandat 1282.048 kb on - strandat 1282.123 kb on - strand, within MCAODC_22620at 1282.126 kb on + strand, within MCAODC_22620at 1282.136 kb on - strand, within MCAODC_22620at 1282.138 kb on - strand, within MCAODC_22620at 1282.138 kb on - strand, within MCAODC_22620at 1282.178 kb on - strandat 1282.237 kb on + strandat 1282.333 kb on + strandat 1282.333 kb on + strandat 1282.535 kb on - strandat 1282.790 kb on - strandat 1282.792 kb on + strandat 1282.793 kb on - strandat 1282.796 kb on + strandat 1282.797 kb on - strandat 1282.797 kb on - strandat 1282.797 kb on - strandat 1282.799 kb on + strandat 1282.816 kb on + strandat 1282.817 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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1,281,823 + +0.3
1,281,906 + -0.8
1,281,910 + +3.3
1,281,910 + +0.6
1,281,910 + +0.6
1,281,910 + -0.4
1,281,911 - -0.9
1,282,043 - +0.8
1,282,048 - -1.0
1,282,048 - -0.8
1,282,123 - MCAODC_22620 0.55 -0.8
1,282,126 + MCAODC_22620 0.57 -0.5
1,282,136 - MCAODC_22620 0.64 +1.8
1,282,138 - MCAODC_22620 0.65 -2.3
1,282,138 - MCAODC_22620 0.65 -0.2
1,282,178 - +1.5
1,282,237 + -0.1
1,282,333 + +1.7
1,282,333 + +0.5
1,282,535 - +0.6
1,282,790 - -0.1
1,282,792 + -0.4
1,282,793 - +1.0
1,282,796 + -0.9
1,282,797 - -0.3
1,282,797 - +0.9
1,282,797 - -0.7
1,282,799 + +0.9
1,282,816 + -1.7
1,282,817 - -1.5

Or see this region's nucleotide sequence