Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mcrA and MCAODC_22615 are separated by 44 nucleotides MCAODC_22615 and MCAODC_22620 are separated by 222 nucleotides MCAODC_22620 and MCAODC_22625 are separated by 356 nucleotides MCAODC_22625 and MCAODC_22630 are separated by 23 nucleotides
MCAODC_22610: mcrA - HNH endonuclease, at 1,281,324 to 1,281,689
mcrA
MCAODC_22615: MCAODC_22615 - hypothetical protein, at 1,281,734 to 1,281,823
_22615
MCAODC_22620: MCAODC_22620 - hypothetical protein, at 1,282,046 to 1,282,186
_22620
MCAODC_22625: MCAODC_22625 - hypothetical protein, at 1,282,543 to 1,282,767
_22625
MCAODC_22630: MCAODC_22630 - lysis protein, at 1,282,791 to 1,283,258
_22630
Position (kb)
1282
1283 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1281.823 kb on + strand at 1281.906 kb on + strand at 1281.910 kb on + strand at 1281.910 kb on + strand at 1281.910 kb on + strand at 1281.910 kb on + strand at 1281.911 kb on - strand at 1282.043 kb on - strand at 1282.048 kb on - strand at 1282.048 kb on - strand at 1282.123 kb on - strand, within MCAODC_22620 at 1282.126 kb on + strand, within MCAODC_22620 at 1282.136 kb on - strand, within MCAODC_22620 at 1282.138 kb on - strand, within MCAODC_22620 at 1282.138 kb on - strand, within MCAODC_22620 at 1282.178 kb on - strand at 1282.237 kb on + strand at 1282.333 kb on + strand at 1282.333 kb on + strand at 1282.535 kb on - strand at 1282.790 kb on - strand at 1282.792 kb on + strand at 1282.793 kb on - strand at 1282.796 kb on + strand at 1282.797 kb on - strand at 1282.797 kb on - strand at 1282.797 kb on - strand at 1282.799 kb on + strand at 1282.816 kb on + strand at 1282.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 1,281,823 + +0.3 1,281,906 + -0.8 1,281,910 + +3.3 1,281,910 + +0.6 1,281,910 + +0.6 1,281,910 + -0.4 1,281,911 - -0.9 1,282,043 - +0.8 1,282,048 - -1.0 1,282,048 - -0.8 1,282,123 - MCAODC_22620 0.55 -0.8 1,282,126 + MCAODC_22620 0.57 -0.5 1,282,136 - MCAODC_22620 0.64 +1.8 1,282,138 - MCAODC_22620 0.65 -2.3 1,282,138 - MCAODC_22620 0.65 -0.2 1,282,178 - +1.5 1,282,237 + -0.1 1,282,333 + +1.7 1,282,333 + +0.5 1,282,535 - +0.6 1,282,790 - -0.1 1,282,792 + -0.4 1,282,793 - +1.0 1,282,796 + -0.9 1,282,797 - -0.3 1,282,797 - +0.9 1,282,797 - -0.7 1,282,799 + +0.9 1,282,816 + -1.7 1,282,817 - -1.5
Or see this region's nucleotide sequence