Strain Fitness in Escherichia coli ECRC101 around MCAODC_22060

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22055 and MCAODC_22060 are separated by 64 nucleotidesMCAODC_22060 and MCAODC_22065 are separated by 66 nucleotides MCAODC_22055: MCAODC_22055 - Enterobacterial Ail/Lom protein, at 1,188,250 to 1,191,165 _22055 MCAODC_22060: MCAODC_22060 - Ail/Lom family protein, at 1,191,230 to 1,191,829 _22060 MCAODC_22065: MCAODC_22065 - phage portal protein, at 1,191,896 to 1,195,294 _22065 Position (kb) 1191 1192Strain fitness (log2 ratio) -2 -1 0 1at 1190.254 kb on + strand, within MCAODC_22055at 1190.322 kb on + strand, within MCAODC_22055at 1190.322 kb on + strand, within MCAODC_22055at 1190.323 kb on - strand, within MCAODC_22055at 1191.076 kb on - strandat 1191.298 kb on - strand, within MCAODC_22060at 1191.428 kb on + strand, within MCAODC_22060at 1191.469 kb on - strand, within MCAODC_22060at 1191.905 kb on - strandat 1191.911 kb on - strandat 1191.911 kb on - strandat 1191.911 kb on - strandat 1192.803 kb on - strand, within MCAODC_22065

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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1,190,254 + MCAODC_22055 0.69 +0.5
1,190,322 + MCAODC_22055 0.71 +0.9
1,190,322 + MCAODC_22055 0.71 +0.9
1,190,323 - MCAODC_22055 0.71 +0.1
1,191,076 - +1.2
1,191,298 - MCAODC_22060 0.11 -2.3
1,191,428 + MCAODC_22060 0.33 -0.7
1,191,469 - MCAODC_22060 0.40 -1.5
1,191,905 - -0.3
1,191,911 - +0.4
1,191,911 - +1.0
1,191,911 - -0.5
1,192,803 - MCAODC_22065 0.27 +1.5

Or see this region's nucleotide sequence