Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dacD and sbcB are separated by 208 nucleotides sbcB and yeeD are separated by 42 nucleotides yeeD and yeeE are separated by 13 nucleotides
MCAODC_20370: dacD - serine-type D-Ala-D-Ala carboxypeptidase DacD, at 881,778 to 882,944
dacD
MCAODC_20375: sbcB - exodeoxyribonuclease I, at 883,153 to 884,580
sbcB
MCAODC_20380: yeeD - Putative sulfur carrier protein YeeD, at 884,623 to 884,850
yeeD
MCAODC_20385: yeeE - transport protein YeeE, at 884,864 to 885,868
yeeE
Position (kb) 883
884
885 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 882.201 kb on + strand, within dacD at 882.202 kb on - strand, within dacD at 882.202 kb on - strand, within dacD at 882.239 kb on + strand, within dacD at 882.239 kb on + strand, within dacD at 882.240 kb on - strand, within dacD at 882.240 kb on - strand, within dacD at 882.240 kb on - strand, within dacD at 882.240 kb on - strand, within dacD at 882.240 kb on - strand, within dacD at 882.340 kb on + strand, within dacD at 882.340 kb on + strand, within dacD at 882.340 kb on + strand, within dacD at 882.340 kb on + strand, within dacD at 882.341 kb on - strand, within dacD at 882.341 kb on - strand, within dacD at 882.341 kb on - strand, within dacD at 882.344 kb on + strand, within dacD at 882.344 kb on + strand, within dacD at 882.344 kb on + strand, within dacD at 882.345 kb on - strand, within dacD at 882.345 kb on - strand, within dacD at 882.345 kb on - strand, within dacD at 882.345 kb on - strand, within dacD at 882.345 kb on - strand, within dacD at 882.349 kb on + strand, within dacD at 882.410 kb on + strand, within dacD at 882.411 kb on - strand, within dacD at 882.482 kb on - strand, within dacD at 882.525 kb on - strand, within dacD at 882.525 kb on - strand, within dacD at 882.571 kb on - strand, within dacD at 882.650 kb on + strand, within dacD at 882.651 kb on - strand, within dacD at 882.651 kb on - strand, within dacD at 882.711 kb on - strand, within dacD at 882.734 kb on - strand, within dacD at 882.734 kb on - strand, within dacD at 882.814 kb on + strand, within dacD at 882.815 kb on - strand, within dacD at 882.897 kb on + strand at 882.897 kb on + strand at 882.929 kb on + strand at 882.930 kb on - strand at 882.990 kb on + strand at 882.990 kb on + strand at 883.146 kb on + strand at 883.151 kb on + strand at 883.198 kb on + strand at 883.322 kb on - strand, within sbcB at 883.343 kb on + strand, within sbcB at 883.346 kb on + strand, within sbcB at 883.346 kb on + strand, within sbcB at 883.346 kb on + strand, within sbcB at 883.572 kb on + strand, within sbcB at 883.683 kb on + strand, within sbcB at 883.683 kb on + strand, within sbcB at 883.722 kb on + strand, within sbcB at 883.788 kb on + strand, within sbcB at 883.789 kb on - strand, within sbcB at 883.933 kb on - strand, within sbcB at 884.000 kb on + strand, within sbcB at 884.002 kb on + strand, within sbcB at 884.096 kb on + strand, within sbcB at 884.224 kb on - strand, within sbcB at 884.413 kb on + strand, within sbcB at 884.480 kb on - strand at 884.512 kb on + strand at 884.512 kb on + strand at 884.543 kb on + strand at 884.797 kb on + strand, within yeeD at 884.797 kb on + strand, within yeeD at 884.798 kb on - strand, within yeeD at 884.798 kb on - strand, within yeeD at 884.798 kb on - strand, within yeeD at 884.798 kb on - strand, within yeeD at 884.855 kb on - strand at 884.861 kb on + strand at 884.897 kb on - strand at 884.914 kb on - strand at 884.951 kb on - strand at 884.955 kb on - strand at 884.955 kb on - strand at 884.955 kb on - strand at 885.053 kb on + strand, within yeeE at 885.063 kb on - strand, within yeeE at 885.071 kb on - strand, within yeeE at 885.074 kb on + strand, within yeeE at 885.075 kb on - strand, within yeeE at 885.178 kb on + strand, within yeeE at 885.178 kb on + strand, within yeeE at 885.179 kb on - strand, within yeeE at 885.179 kb on - strand, within yeeE at 885.184 kb on - strand, within yeeE at 885.184 kb on - strand, within yeeE at 885.253 kb on + strand, within yeeE at 885.254 kb on - strand, within yeeE at 885.254 kb on - strand, within yeeE at 885.285 kb on - strand, within yeeE at 885.350 kb on - strand, within yeeE at 885.491 kb on - strand, within yeeE at 885.505 kb on + strand, within yeeE at 885.511 kb on - strand, within yeeE at 885.575 kb on - strand, within yeeE at 885.575 kb on - strand, within yeeE at 885.576 kb on + strand, within yeeE at 885.577 kb on - strand, within yeeE at 885.577 kb on - strand, within yeeE at 885.577 kb on - strand, within yeeE at 885.577 kb on - strand, within yeeE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 882,201 + dacD MCAODC_20370 0.36 -1.2 882,202 - dacD MCAODC_20370 0.36 -0.0 882,202 - dacD MCAODC_20370 0.36 -1.3 882,239 + dacD MCAODC_20370 0.40 -2.5 882,239 + dacD MCAODC_20370 0.40 +0.5 882,240 - dacD MCAODC_20370 0.40 +1.1 882,240 - dacD MCAODC_20370 0.40 +0.6 882,240 - dacD MCAODC_20370 0.40 -2.4 882,240 - dacD MCAODC_20370 0.40 +4.0 882,240 - dacD MCAODC_20370 0.40 +0.4 882,340 + dacD MCAODC_20370 0.48 -0.3 882,340 + dacD MCAODC_20370 0.48 +0.2 882,340 + dacD MCAODC_20370 0.48 -0.1 882,340 + dacD MCAODC_20370 0.48 +0.2 882,341 - dacD MCAODC_20370 0.48 -0.6 882,341 - dacD MCAODC_20370 0.48 -0.1 882,341 - dacD MCAODC_20370 0.48 -0.5 882,344 + dacD MCAODC_20370 0.49 +1.7 882,344 + dacD MCAODC_20370 0.49 -0.9 882,344 + dacD MCAODC_20370 0.49 +0.4 882,345 - dacD MCAODC_20370 0.49 +1.7 882,345 - dacD MCAODC_20370 0.49 +1.1 882,345 - dacD MCAODC_20370 0.49 -1.1 882,345 - dacD MCAODC_20370 0.49 -0.5 882,345 - dacD MCAODC_20370 0.49 -0.6 882,349 + dacD MCAODC_20370 0.49 +0.2 882,410 + dacD MCAODC_20370 0.54 +0.7 882,411 - dacD MCAODC_20370 0.54 -0.2 882,482 - dacD MCAODC_20370 0.60 -0.6 882,525 - dacD MCAODC_20370 0.64 -3.1 882,525 - dacD MCAODC_20370 0.64 +2.0 882,571 - dacD MCAODC_20370 0.68 +0.0 882,650 + dacD MCAODC_20370 0.75 -0.1 882,651 - dacD MCAODC_20370 0.75 -1.7 882,651 - dacD MCAODC_20370 0.75 -0.8 882,711 - dacD MCAODC_20370 0.80 -0.3 882,734 - dacD MCAODC_20370 0.82 -0.4 882,734 - dacD MCAODC_20370 0.82 +1.0 882,814 + dacD MCAODC_20370 0.89 +0.3 882,815 - dacD MCAODC_20370 0.89 +1.4 882,897 + -0.6 882,897 + -1.2 882,929 + -1.3 882,930 - +0.4 882,990 + -0.9 882,990 + -1.9 883,146 + +1.3 883,151 + +1.7 883,198 + -0.4 883,322 - sbcB MCAODC_20375 0.12 -2.1 883,343 + sbcB MCAODC_20375 0.13 +0.4 883,346 + sbcB MCAODC_20375 0.14 -2.1 883,346 + sbcB MCAODC_20375 0.14 -1.5 883,346 + sbcB MCAODC_20375 0.14 +2.5 883,572 + sbcB MCAODC_20375 0.29 -0.8 883,683 + sbcB MCAODC_20375 0.37 +0.8 883,683 + sbcB MCAODC_20375 0.37 +0.4 883,722 + sbcB MCAODC_20375 0.40 -1.2 883,788 + sbcB MCAODC_20375 0.44 -0.5 883,789 - sbcB MCAODC_20375 0.45 +0.1 883,933 - sbcB MCAODC_20375 0.55 -2.8 884,000 + sbcB MCAODC_20375 0.59 -1.2 884,002 + sbcB MCAODC_20375 0.59 -0.5 884,096 + sbcB MCAODC_20375 0.66 -1.5 884,224 - sbcB MCAODC_20375 0.75 +0.1 884,413 + sbcB MCAODC_20375 0.88 -0.9 884,480 - +1.4 884,512 + -2.2 884,512 + -1.1 884,543 + +1.4 884,797 + yeeD MCAODC_20380 0.76 +0.8 884,797 + yeeD MCAODC_20380 0.76 -1.4 884,798 - yeeD MCAODC_20380 0.77 -1.5 884,798 - yeeD MCAODC_20380 0.77 +1.1 884,798 - yeeD MCAODC_20380 0.77 -1.5 884,798 - yeeD MCAODC_20380 0.77 +1.4 884,855 - -0.6 884,861 + +0.3 884,897 - -2.0 884,914 - -1.0 884,951 - -2.2 884,955 - -1.5 884,955 - +0.0 884,955 - +0.2 885,053 + yeeE MCAODC_20385 0.19 -0.7 885,063 - yeeE MCAODC_20385 0.20 +0.6 885,071 - yeeE MCAODC_20385 0.21 -0.8 885,074 + yeeE MCAODC_20385 0.21 -0.3 885,075 - yeeE MCAODC_20385 0.21 -2.4 885,178 + yeeE MCAODC_20385 0.31 +0.3 885,178 + yeeE MCAODC_20385 0.31 +0.8 885,179 - yeeE MCAODC_20385 0.31 +0.5 885,179 - yeeE MCAODC_20385 0.31 +0.1 885,184 - yeeE MCAODC_20385 0.32 -1.0 885,184 - yeeE MCAODC_20385 0.32 +0.2 885,253 + yeeE MCAODC_20385 0.39 -1.5 885,254 - yeeE MCAODC_20385 0.39 +0.2 885,254 - yeeE MCAODC_20385 0.39 -1.6 885,285 - yeeE MCAODC_20385 0.42 +0.7 885,350 - yeeE MCAODC_20385 0.48 -0.5 885,491 - yeeE MCAODC_20385 0.62 +1.1 885,505 + yeeE MCAODC_20385 0.64 +2.7 885,511 - yeeE MCAODC_20385 0.64 -0.3 885,575 - yeeE MCAODC_20385 0.71 +0.6 885,575 - yeeE MCAODC_20385 0.71 +0.0 885,576 + yeeE MCAODC_20385 0.71 -0.6 885,577 - yeeE MCAODC_20385 0.71 +0.8 885,577 - yeeE MCAODC_20385 0.71 +0.0 885,577 - yeeE MCAODC_20385 0.71 +0.3 885,577 - yeeE MCAODC_20385 0.71 -2.8
Or see this region's nucleotide sequence