Strain Fitness in Escherichia coli ECRC101 around MCAODC_18970

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsmF and yebV are separated by 117 nucleotidesyebV and yebW are separated by 20 nucleotidesyebW and pphA are separated by 0 nucleotides MCAODC_18965: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 651,315 to 652,760 rsmF MCAODC_18970: yebV - Uncharacterized protein YebV, at 652,878 to 653,114 yebV MCAODC_18975: yebW - Uncharacterized protein YebW, at 653,135 to 653,410 yebW MCAODC_18980: pphA - protein-serine/threonine phosphatase, at 653,411 to 654,067 pphA Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1 2at 652.285 kb on - strand, within rsmFat 652.751 kb on + strandat 652.860 kb on + strandat 652.927 kb on + strand, within yebVat 652.991 kb on + strand, within yebVat 653.062 kb on - strand, within yebVat 653.232 kb on + strand, within yebWat 653.232 kb on + strand, within yebWat 653.247 kb on - strand, within yebWat 653.269 kb on + strand, within yebWat 653.314 kb on + strand, within yebWat 653.367 kb on + strand, within yebWat 653.466 kb on + strandat 653.467 kb on - strandat 653.507 kb on - strand, within pphAat 653.537 kb on - strand, within pphAat 653.927 kb on + strand, within pphAat 653.993 kb on + strand, within pphAat 653.994 kb on - strand, within pphAat 653.994 kb on - strand, within pphAat 654.014 kb on - strandat 654.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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652,285 - rsmF MCAODC_18965 0.67 -0.3
652,751 + -0.0
652,860 + -0.4
652,927 + yebV MCAODC_18970 0.21 -0.5
652,991 + yebV MCAODC_18970 0.48 -0.8
653,062 - yebV MCAODC_18970 0.78 -1.4
653,232 + yebW MCAODC_18975 0.35 -2.6
653,232 + yebW MCAODC_18975 0.35 +2.0
653,247 - yebW MCAODC_18975 0.41 +1.0
653,269 + yebW MCAODC_18975 0.49 +0.7
653,314 + yebW MCAODC_18975 0.65 -0.3
653,367 + yebW MCAODC_18975 0.84 -0.8
653,466 + +2.0
653,467 - -1.2
653,507 - pphA MCAODC_18980 0.15 -0.1
653,537 - pphA MCAODC_18980 0.19 -0.6
653,927 + pphA MCAODC_18980 0.79 -0.6
653,993 + pphA MCAODC_18980 0.89 +0.3
653,994 - pphA MCAODC_18980 0.89 -0.0
653,994 - pphA MCAODC_18980 0.89 +1.0
654,014 - -0.4
654,014 - +0.4

Or see this region's nucleotide sequence