Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pabB and nudL are separated by 3 nucleotides nudL and sdaA are separated by 183 nucleotides sdaA and pdeD are separated by 130 nucleotides
MCAODC_18850: pabB - aminodeoxychorismate synthase component 1, at 625,902 to 627,263
pabB
MCAODC_18855: nudL - CoA pyrophosphatase, at 627,267 to 627,845
nudL
MCAODC_18860: sdaA - L-serine ammonia-lyase, at 628,029 to 629,393
sdaA
MCAODC_18865: pdeD - putative cyclic di-GMP phosphodiesterase PdeD, at 629,524 to 631,122
pdeD
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 627.062 kb on + strand, within pabB at 627.087 kb on + strand, within pabB at 627.087 kb on + strand, within pabB at 627.125 kb on + strand, within pabB at 627.157 kb on + strand at 627.157 kb on + strand at 627.157 kb on + strand at 627.157 kb on + strand at 627.159 kb on + strand at 627.160 kb on - strand at 627.227 kb on + strand at 627.227 kb on + strand at 627.236 kb on + strand at 627.242 kb on - strand at 627.346 kb on + strand, within nudL at 627.370 kb on + strand, within nudL at 627.371 kb on - strand, within nudL at 627.495 kb on - strand, within nudL at 627.533 kb on + strand, within nudL at 627.534 kb on - strand, within nudL at 627.534 kb on - strand, within nudL at 627.586 kb on + strand, within nudL at 627.586 kb on + strand, within nudL at 627.586 kb on + strand, within nudL at 627.697 kb on + strand, within nudL at 627.698 kb on - strand, within nudL at 627.721 kb on + strand, within nudL at 627.721 kb on + strand, within nudL at 627.725 kb on + strand, within nudL at 627.726 kb on - strand, within nudL at 627.726 kb on - strand, within nudL at 627.777 kb on + strand, within nudL at 627.806 kb on - strand at 627.849 kb on + strand at 627.849 kb on + strand at 627.850 kb on - strand at 627.859 kb on + strand at 627.860 kb on - strand at 627.875 kb on + strand at 627.896 kb on + strand at 627.896 kb on + strand at 627.900 kb on - strand at 627.967 kb on + strand at 627.972 kb on + strand at 627.972 kb on + strand at 627.972 kb on + strand at 627.982 kb on + strand at 627.982 kb on + strand at 627.985 kb on + strand at 627.985 kb on + strand at 628.052 kb on + strand at 628.094 kb on + strand at 628.095 kb on - strand at 628.274 kb on + strand, within sdaA at 628.422 kb on + strand, within sdaA at 628.455 kb on + strand, within sdaA at 628.458 kb on + strand, within sdaA at 628.458 kb on + strand, within sdaA at 628.508 kb on + strand, within sdaA at 628.566 kb on + strand, within sdaA at 628.571 kb on + strand, within sdaA at 628.923 kb on + strand, within sdaA at 628.923 kb on + strand, within sdaA at 628.926 kb on + strand, within sdaA at 628.926 kb on + strand, within sdaA at 628.926 kb on + strand, within sdaA at 628.927 kb on - strand, within sdaA at 628.927 kb on - strand, within sdaA at 628.927 kb on - strand, within sdaA at 628.962 kb on + strand, within sdaA at 628.962 kb on + strand, within sdaA at 628.962 kb on + strand, within sdaA at 628.962 kb on + strand, within sdaA at 628.962 kb on + strand, within sdaA at 628.963 kb on - strand, within sdaA at 628.963 kb on - strand, within sdaA at 628.965 kb on - strand, within sdaA at 628.977 kb on - strand, within sdaA at 629.004 kb on + strand, within sdaA at 629.004 kb on + strand, within sdaA at 629.004 kb on + strand, within sdaA at 629.213 kb on + strand, within sdaA at 629.313 kb on + strand at 629.313 kb on + strand at 629.391 kb on + strand at 629.394 kb on + strand at 629.394 kb on + strand at 629.395 kb on - strand at 629.401 kb on + strand at 629.402 kb on - strand at 629.548 kb on - strand at 629.664 kb on - strand at 629.697 kb on + strand, within pdeD at 629.703 kb on - strand, within pdeD at 629.781 kb on - strand, within pdeD at 629.785 kb on - strand, within pdeD at 629.845 kb on + strand, within pdeD at 629.845 kb on + strand, within pdeD at 629.953 kb on - strand, within pdeD at 630.024 kb on + strand, within pdeD at 630.241 kb on + strand, within pdeD at 630.242 kb on - strand, within pdeD at 630.276 kb on - strand, within pdeD at 630.282 kb on - strand, within pdeD at 630.293 kb on - strand, within pdeD at 630.293 kb on - strand, within pdeD at 630.293 kb on - strand, within pdeD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 627,062 + pabB MCAODC_18850 0.85 -0.1 627,087 + pabB MCAODC_18850 0.87 +1.4 627,087 + pabB MCAODC_18850 0.87 +0.0 627,125 + pabB MCAODC_18850 0.90 -0.9 627,157 + -0.7 627,157 + +0.2 627,157 + -1.7 627,157 + +0.0 627,159 + -2.9 627,160 - +0.6 627,227 + +0.8 627,227 + -0.6 627,236 + -2.3 627,242 - +0.5 627,346 + nudL MCAODC_18855 0.14 -0.2 627,370 + nudL MCAODC_18855 0.18 +1.1 627,371 - nudL MCAODC_18855 0.18 +0.2 627,495 - nudL MCAODC_18855 0.39 -2.0 627,533 + nudL MCAODC_18855 0.46 +1.5 627,534 - nudL MCAODC_18855 0.46 -0.2 627,534 - nudL MCAODC_18855 0.46 +0.8 627,586 + nudL MCAODC_18855 0.55 -0.6 627,586 + nudL MCAODC_18855 0.55 +1.2 627,586 + nudL MCAODC_18855 0.55 +0.8 627,697 + nudL MCAODC_18855 0.74 +0.1 627,698 - nudL MCAODC_18855 0.74 +1.1 627,721 + nudL MCAODC_18855 0.78 -0.6 627,721 + nudL MCAODC_18855 0.78 -0.1 627,725 + nudL MCAODC_18855 0.79 -1.8 627,726 - nudL MCAODC_18855 0.79 -0.2 627,726 - nudL MCAODC_18855 0.79 +3.1 627,777 + nudL MCAODC_18855 0.88 +0.3 627,806 - -2.5 627,849 + +0.6 627,849 + -0.9 627,850 - -0.5 627,859 + +0.9 627,860 - +2.2 627,875 + +0.5 627,896 + +0.3 627,896 + -1.1 627,900 - +0.6 627,967 + -0.4 627,972 + +0.4 627,972 + -1.9 627,972 + +0.5 627,982 + +0.4 627,982 + -1.7 627,985 + -0.4 627,985 + +0.2 628,052 + -1.5 628,094 + -0.1 628,095 - -1.6 628,274 + sdaA MCAODC_18860 0.18 +0.8 628,422 + sdaA MCAODC_18860 0.29 +1.6 628,455 + sdaA MCAODC_18860 0.31 -0.3 628,458 + sdaA MCAODC_18860 0.31 -1.4 628,458 + sdaA MCAODC_18860 0.31 +0.6 628,508 + sdaA MCAODC_18860 0.35 -2.4 628,566 + sdaA MCAODC_18860 0.39 -0.9 628,571 + sdaA MCAODC_18860 0.40 -0.1 628,923 + sdaA MCAODC_18860 0.65 -0.6 628,923 + sdaA MCAODC_18860 0.65 +0.1 628,926 + sdaA MCAODC_18860 0.66 -1.7 628,926 + sdaA MCAODC_18860 0.66 -1.0 628,926 + sdaA MCAODC_18860 0.66 +0.7 628,927 - sdaA MCAODC_18860 0.66 +1.0 628,927 - sdaA MCAODC_18860 0.66 +0.0 628,927 - sdaA MCAODC_18860 0.66 -1.3 628,962 + sdaA MCAODC_18860 0.68 -0.6 628,962 + sdaA MCAODC_18860 0.68 +0.9 628,962 + sdaA MCAODC_18860 0.68 -0.9 628,962 + sdaA MCAODC_18860 0.68 -0.7 628,962 + sdaA MCAODC_18860 0.68 -0.7 628,963 - sdaA MCAODC_18860 0.68 -0.7 628,963 - sdaA MCAODC_18860 0.68 -1.0 628,965 - sdaA MCAODC_18860 0.69 -2.8 628,977 - sdaA MCAODC_18860 0.69 +0.2 629,004 + sdaA MCAODC_18860 0.71 +0.1 629,004 + sdaA MCAODC_18860 0.71 +0.2 629,004 + sdaA MCAODC_18860 0.71 -0.5 629,213 + sdaA MCAODC_18860 0.87 -2.6 629,313 + +0.8 629,313 + -1.4 629,391 + -0.8 629,394 + +1.2 629,394 + +1.2 629,395 - +1.7 629,401 + +1.4 629,402 - -0.6 629,548 - -3.4 629,664 - +0.6 629,697 + pdeD MCAODC_18865 0.11 -2.2 629,703 - pdeD MCAODC_18865 0.11 +1.7 629,781 - pdeD MCAODC_18865 0.16 +1.2 629,785 - pdeD MCAODC_18865 0.16 -1.8 629,845 + pdeD MCAODC_18865 0.20 +0.0 629,845 + pdeD MCAODC_18865 0.20 +2.7 629,953 - pdeD MCAODC_18865 0.27 -0.0 630,024 + pdeD MCAODC_18865 0.31 +1.7 630,241 + pdeD MCAODC_18865 0.45 +1.1 630,242 - pdeD MCAODC_18865 0.45 +0.4 630,276 - pdeD MCAODC_18865 0.47 +1.2 630,282 - pdeD MCAODC_18865 0.47 +1.1 630,293 - pdeD MCAODC_18865 0.48 +0.9 630,293 - pdeD MCAODC_18865 0.48 +1.8 630,293 - pdeD MCAODC_18865 0.48 -0.4
Or see this region's nucleotide sequence