Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt anmK and slyB are separated by 272 nucleotides slyB and slyA are separated by 46 nucleotides slyA and ydhI are separated by 200 nucleotides ydhI and ydhJ are separated by 2 nucleotides
MCAODC_17925: anmK - anhydro-N-acetylmuramic acid kinase, at 447,489 to 448,598
anmK
MCAODC_17930: slyB - outer membrane lipoprotein SlyB, at 448,871 to 449,338
slyB
MCAODC_17935: slyA - transcriptional regulator SlyA, at 449,385 to 449,819
slyA
MCAODC_17940: ydhI - Uncharacterized protein YdhI, at 450,020 to 450,256
ydhI
MCAODC_17945: ydhJ - Uncharacterized protein YdhJ, at 450,259 to 451,116
ydhJ
Position (kb) 449
450 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 448.642 kb on - strand at 448.656 kb on + strand at 448.699 kb on + strand at 448.700 kb on - strand at 448.713 kb on + strand at 448.735 kb on + strand at 448.736 kb on - strand at 448.751 kb on + strand at 448.789 kb on + strand at 448.789 kb on + strand at 448.790 kb on - strand at 448.805 kb on + strand at 448.805 kb on + strand at 448.805 kb on + strand at 448.805 kb on + strand at 448.805 kb on + strand at 448.806 kb on - strand at 448.812 kb on + strand at 448.814 kb on + strand at 448.815 kb on - strand at 448.815 kb on - strand at 448.884 kb on + strand at 448.930 kb on + strand, within slyB at 448.955 kb on + strand, within slyB at 448.955 kb on + strand, within slyB at 448.956 kb on - strand, within slyB at 449.014 kb on - strand, within slyB at 449.014 kb on - strand, within slyB at 449.098 kb on + strand, within slyB at 449.160 kb on + strand, within slyB at 449.233 kb on + strand, within slyB at 449.233 kb on + strand, within slyB at 449.250 kb on + strand, within slyB at 449.250 kb on + strand, within slyB at 449.295 kb on + strand at 449.295 kb on + strand at 449.295 kb on + strand at 449.340 kb on + strand at 449.553 kb on - strand, within slyA at 449.709 kb on + strand, within slyA at 449.761 kb on - strand, within slyA at 449.776 kb on - strand at 449.869 kb on + strand at 449.870 kb on - strand at 449.885 kb on + strand at 449.885 kb on + strand at 449.930 kb on + strand at 449.972 kb on + strand at 449.993 kb on - strand at 449.993 kb on - strand at 449.994 kb on + strand at 450.138 kb on + strand, within ydhI at 450.139 kb on - strand, within ydhI at 450.139 kb on - strand, within ydhI at 450.397 kb on - strand, within ydhJ at 450.435 kb on + strand, within ydhJ at 450.437 kb on + strand, within ydhJ at 450.747 kb on + strand, within ydhJ at 450.747 kb on + strand, within ydhJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 448,642 - +0.3 448,656 + +1.3 448,699 + +0.8 448,700 - +0.0 448,713 + +0.9 448,735 + +0.4 448,736 - +0.3 448,751 + +0.1 448,789 + +0.2 448,789 + -1.2 448,790 - +1.7 448,805 + -0.1 448,805 + -0.8 448,805 + +0.4 448,805 + +1.3 448,805 + -1.1 448,806 - +3.5 448,812 + +0.6 448,814 + +0.4 448,815 - +0.0 448,815 - -1.2 448,884 + -0.6 448,930 + slyB MCAODC_17930 0.13 -0.5 448,955 + slyB MCAODC_17930 0.18 -1.2 448,955 + slyB MCAODC_17930 0.18 -1.5 448,956 - slyB MCAODC_17930 0.18 +0.4 449,014 - slyB MCAODC_17930 0.31 +2.8 449,014 - slyB MCAODC_17930 0.31 -0.9 449,098 + slyB MCAODC_17930 0.49 -1.0 449,160 + slyB MCAODC_17930 0.62 -0.2 449,233 + slyB MCAODC_17930 0.77 -0.9 449,233 + slyB MCAODC_17930 0.77 -1.0 449,250 + slyB MCAODC_17930 0.81 +1.3 449,250 + slyB MCAODC_17930 0.81 +0.3 449,295 + -0.9 449,295 + -0.2 449,295 + +2.8 449,340 + -0.5 449,553 - slyA MCAODC_17935 0.39 -1.7 449,709 + slyA MCAODC_17935 0.74 -0.6 449,761 - slyA MCAODC_17935 0.86 -1.8 449,776 - -0.6 449,869 + -0.4 449,870 - -0.6 449,885 + -1.8 449,885 + -1.7 449,930 + -1.4 449,972 + +1.6 449,993 - +3.8 449,993 - +0.4 449,994 + -0.3 450,138 + ydhI MCAODC_17940 0.50 +0.1 450,139 - ydhI MCAODC_17940 0.50 -1.8 450,139 - ydhI MCAODC_17940 0.50 -0.6 450,397 - ydhJ MCAODC_17945 0.16 -0.8 450,435 + ydhJ MCAODC_17945 0.21 +0.4 450,437 + ydhJ MCAODC_17945 0.21 +0.5 450,747 + ydhJ MCAODC_17945 0.57 -0.2 450,747 + ydhJ MCAODC_17945 0.57 -0.2
Or see this region's nucleotide sequence