Strain Fitness in Escherichia coli ECRC101 around MCAODC_17920

Experiment: Bas06

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrS and pdxH are separated by 128 nucleotidespdxH and mliC are separated by 58 nucleotidesmliC and anmK are separated by 103 nucleotides MCAODC_17910: tyrS - tyrosine--tRNA ligase, at 444,944 to 446,218 tyrS MCAODC_17915: pdxH - pyridoxamine 5'-phosphate oxidase, at 446,347 to 447,003 pdxH MCAODC_17920: mliC - C-type lysozyme inhibitor, at 447,062 to 447,385 mliC MCAODC_17925: anmK - anhydro-N-acetylmuramic acid kinase, at 447,489 to 448,598 anmK Position (kb) 447 448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 446.233 kb on - strandat 446.290 kb on - strandat 447.081 kb on - strandat 447.117 kb on + strand, within mliCat 447.154 kb on - strand, within mliCat 447.210 kb on - strand, within mliCat 447.210 kb on - strand, within mliCat 447.368 kb on - strandat 447.425 kb on - strandat 447.626 kb on + strand, within anmKat 447.856 kb on + strand, within anmKat 447.857 kb on - strand, within anmKat 447.857 kb on - strand, within anmKat 447.860 kb on + strand, within anmKat 447.904 kb on + strand, within anmKat 447.980 kb on - strand, within anmKat 448.156 kb on - strand, within anmKat 448.218 kb on - strand, within anmKat 448.218 kb on - strand, within anmKat 448.327 kb on - strand, within anmKat 448.327 kb on - strand, within anmKat 448.327 kb on - strand, within anmKat 448.327 kb on - strand, within anmKat 448.327 kb on - strand, within anmKat 448.329 kb on - strand, within anmK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
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446,233 - -1.1
446,290 - -0.4
447,081 - +2.8
447,117 + mliC MCAODC_17920 0.17 -0.7
447,154 - mliC MCAODC_17920 0.28 -1.9
447,210 - mliC MCAODC_17920 0.46 -0.4
447,210 - mliC MCAODC_17920 0.46 +1.4
447,368 - +0.8
447,425 - +1.4
447,626 + anmK MCAODC_17925 0.12 -0.4
447,856 + anmK MCAODC_17925 0.33 +0.3
447,857 - anmK MCAODC_17925 0.33 +0.3
447,857 - anmK MCAODC_17925 0.33 -0.2
447,860 + anmK MCAODC_17925 0.33 +0.2
447,904 + anmK MCAODC_17925 0.37 -0.4
447,980 - anmK MCAODC_17925 0.44 -0.9
448,156 - anmK MCAODC_17925 0.60 +1.3
448,218 - anmK MCAODC_17925 0.66 -1.6
448,218 - anmK MCAODC_17925 0.66 -1.2
448,327 - anmK MCAODC_17925 0.75 +0.5
448,327 - anmK MCAODC_17925 0.75 -0.4
448,327 - anmK MCAODC_17925 0.75 +0.9
448,327 - anmK MCAODC_17925 0.75 +1.0
448,327 - anmK MCAODC_17925 0.75 +0.5
448,329 - anmK MCAODC_17925 0.76 +0.2

Or see this region's nucleotide sequence