Strain Fitness in Escherichia coli ECRC101 around MCAODC_17200

Experiment: Bas06

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_17190 and MCAODC_17195 are separated by 391 nucleotidesMCAODC_17195 and MCAODC_17200 are separated by 211 nucleotidesMCAODC_17200 and MCAODC_17205 are separated by 11 nucleotidesMCAODC_17205 and MCAODC_17210 are separated by 0 nucleotides MCAODC_17190: MCAODC_17190 - Antirepressor protein, at 329,841 to 330,083 _17190 MCAODC_17195: MCAODC_17195 - peptidase S24, at 330,475 to 330,813 _17195 MCAODC_17200: MCAODC_17200 - DUF1391 domain-containing protein, at 331,025 to 331,258 _17200 MCAODC_17205: MCAODC_17205 - Ybl81, at 331,270 to 331,908 _17205 MCAODC_17210: MCAODC_17210 - hypothetical protein, at 331,909 to 332,118 _17210 Position (kb) 331 332Strain fitness (log2 ratio) -2 -1 0 1 2 3at 330.066 kb on + strandat 330.067 kb on - strandat 330.839 kb on + strandat 330.839 kb on + strandat 330.861 kb on - strandat 330.999 kb on - strandat 331.143 kb on + strand, within MCAODC_17200at 331.172 kb on - strand, within MCAODC_17200at 331.190 kb on + strand, within MCAODC_17200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas06
remove
330,066 + +0.8
330,067 - -0.6
330,839 + -0.1
330,839 + +3.2
330,861 - +0.3
330,999 - +0.0
331,143 + MCAODC_17200 0.50 -2.4
331,172 - MCAODC_17200 0.63 -1.4
331,190 + MCAODC_17200 0.71 -0.6

Or see this region's nucleotide sequence