Strain Fitness in Escherichia coli ECRC101 around MCAODC_09390

Experiment: Bas06

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas06
1,872,522	-	ygiN	MCAODC_09380	0.17	-0.3
1,872,532	+	ygiN	MCAODC_09380	0.20	+0.1
1,872,533	-	ygiN	MCAODC_09380	0.20	+0.0
1,872,534	+	ygiN	MCAODC_09380	0.20	+0.3
1,872,535	-	ygiN	MCAODC_09380	0.21	-0.6
1,872,535	-	ygiN	MCAODC_09380	0.21	-0.1
1,872,535	-	ygiN	MCAODC_09380	0.21	+0.7
1,872,608	-	ygiN	MCAODC_09380	0.44	-0.3
1,872,608	-	ygiN	MCAODC_09380	0.44	+0.6
1,872,623	-	ygiN	MCAODC_09380	0.49	-1.8
1,872,623	-	ygiN	MCAODC_09380	0.49	-0.3
1,872,774	-				+0.7
1,872,778	+				-0.8
1,872,778	+				-0.0
1,872,778	+				-2.5
1,872,788	+				-0.7
1,872,788	+				+2.2
1,872,789	-				+0.8
1,872,789	-				-0.3
1,872,798	+				+0.3
1,872,799	-				+0.9
1,872,812	+				-1.3
1,872,813	-				+0.5
1,872,846	+				+0.3
1,872,847	-				+0.9
1,872,856	+				-0.7
1,872,856	+				-2.2
1,872,857	-				-1.5
1,872,857	-				+0.5
1,872,882	-	mdaB	MCAODC_09385	0.12	-1.8
1,872,898	+	mdaB	MCAODC_09385	0.14	+0.1
1,872,899	-	mdaB	MCAODC_09385	0.14	+0.5
1,872,941	-	mdaB	MCAODC_09385	0.22	+0.4
1,872,955	-	mdaB	MCAODC_09385	0.24	-1.1
1,872,955	-	mdaB	MCAODC_09385	0.24	-2.5
1,872,955	-	mdaB	MCAODC_09385	0.24	-0.9
1,872,955	-	mdaB	MCAODC_09385	0.24	+0.1
1,873,039	+	mdaB	MCAODC_09385	0.38	-0.7
1,873,055	+	mdaB	MCAODC_09385	0.41	-0.3
1,873,056	-	mdaB	MCAODC_09385	0.41	+0.1
1,873,117	-	mdaB	MCAODC_09385	0.52	-0.5
1,873,142	+	mdaB	MCAODC_09385	0.56	-0.6
1,873,142	+	mdaB	MCAODC_09385	0.56	+1.2
1,873,142	+	mdaB	MCAODC_09385	0.56	-2.3
1,873,142	+	mdaB	MCAODC_09385	0.56	-1.0
1,873,142	+	mdaB	MCAODC_09385	0.56	+0.2
1,873,143	-	mdaB	MCAODC_09385	0.56	+0.2
1,873,156	-	mdaB	MCAODC_09385	0.59	+1.3
1,873,236	-	mdaB	MCAODC_09385	0.72	+0.2
1,873,379	-				-0.0
1,873,429	-				+0.3
1,873,429	-				-0.8
1,873,429	-				+0.9
1,873,430	+				-0.7
1,873,430	+				+1.0
1,873,430	+				-0.5
1,873,430	+				+1.0
1,873,430	+				-1.4
1,873,430	+				-2.2
1,873,430	+				+1.1
1,873,430	+				-0.0
1,873,431	-				+0.1
1,873,431	-				+0.3
1,873,431	-				-0.3
1,873,431	-				+0.5
1,873,431	-				+0.2
1,873,431	-				+0.1
1,873,431	-				-1.9
1,873,431	-				+0.2
1,873,431	-				+0.2
1,873,431	-				-0.7
1,873,431	-				+1.4
1,873,431	-				+1.4
1,873,433	+				-2.2
1,873,433	+				-1.1
1,873,433	+				+0.6
1,873,433	+				-0.6
1,873,433	+				-0.3
1,873,434	-				+0.3
1,873,434	-				-0.9
1,873,434	-				-0.0
1,873,434	-				+1.5
1,873,434	-				-1.5
1,873,434	-				-0.3
1,873,434	-				+0.6
1,873,434	-				-0.3
1,873,507	+				-1.9
1,873,507	+				+1.0
1,873,507	+				-0.6
1,873,507	+				+1.1
1,873,508	-				-0.1
1,873,757	-	qseC	MCAODC_09390	0.19	+0.1
1,873,804	-	qseC	MCAODC_09390	0.22	-2.7
1,873,882	+	qseC	MCAODC_09390	0.28	-0.9
1,873,883	-	qseC	MCAODC_09390	0.28	+2.1
1,873,887	-	qseC	MCAODC_09390	0.28	-2.0
1,873,887	-	qseC	MCAODC_09390	0.28	-1.9
1,873,887	-	qseC	MCAODC_09390	0.28	-0.7
1,874,019	+	qseC	MCAODC_09390	0.38	+0.1
1,874,020	-	qseC	MCAODC_09390	0.38	-1.5
1,874,136	-	qseC	MCAODC_09390	0.47	-2.6
1,874,264	+	qseC	MCAODC_09390	0.56	+0.3
1,874,264	+	qseC	MCAODC_09390	0.56	-1.5
1,874,265	-	qseC	MCAODC_09390	0.56	-0.2
1,874,265	-	qseC	MCAODC_09390	0.56	-3.0
1,874,269	-	qseC	MCAODC_09390	0.57	-1.4
1,874,269	-	qseC	MCAODC_09390	0.57	-2.1
1,874,269	-	qseC	MCAODC_09390	0.57	+0.6
1,874,314	-	qseC	MCAODC_09390	0.60	+0.3
1,874,317	-	qseC	MCAODC_09390	0.60	-2.6
1,874,332	-	qseC	MCAODC_09390	0.61	-1.1
1,874,332	-	qseC	MCAODC_09390	0.61	-0.6
1,874,332	-	qseC	MCAODC_09390	0.61	-1.8
1,874,435	-	qseC	MCAODC_09390	0.69	-2.6
1,874,521	+	qseC	MCAODC_09390	0.75	-0.3
1,874,522	-	qseC	MCAODC_09390	0.75	-0.8
1,874,522	-	qseC	MCAODC_09390	0.75	-2.7
1,874,525	+	qseC	MCAODC_09390	0.75	-3.5
1,874,526	-	qseC	MCAODC_09390	0.76	-2.6
1,874,526	-	qseC	MCAODC_09390	0.76	-3.0
1,874,526	-	qseC	MCAODC_09390	0.76	+1.6
1,874,526	-	qseC	MCAODC_09390	0.76	-1.7
1,874,528	-	qseC	MCAODC_09390	0.76	-0.9
1,874,535	-	qseC	MCAODC_09390	0.76	+0.1
1,874,688	-	qseC	MCAODC_09390	0.88	-2.2
1,874,688	-	qseC	MCAODC_09390	0.88	-1.2
1,874,688	-	qseC	MCAODC_09390	0.88	-2.1
1,874,834	+				-2.0
1,874,864	+				+0.9
1,874,864	+				-0.2
1,874,864	+				+0.7
1,874,864	+				-0.2
1,874,864	+				+0.3
1,874,864	+				-2.0
1,874,865	-				-0.5
1,874,865	-				+0.7
1,874,865	-				+0.5
1,874,865	-				+0.7
1,874,865	-				+1.0
1,874,865	-				+2.5
1,874,865	-				-0.3
1,874,865	-				-0.5
1,874,872	-				-0.5
1,874,878	+				+0.6
1,874,879	-				-1.1
1,874,879	-				+0.8
1,874,879	-				-0.7
1,874,879	-				+0.0
1,874,891	-				-1.0
1,874,891	-				+0.1
1,874,951	-		MCAODC_09395	0.15	-0.8
1,874,974	+		MCAODC_09395	0.18	+0.3
1,874,976	+		MCAODC_09395	0.19	+0.1
1,874,976	+		MCAODC_09395	0.19	-0.5
1,874,977	-		MCAODC_09395	0.19	-0.3
1,874,977	-		MCAODC_09395	0.19	-0.2
1,874,977	-		MCAODC_09395	0.19	+1.5
1,874,977	-		MCAODC_09395	0.19	+0.1
1,874,977	-		MCAODC_09395	0.19	-1.1
1,875,032	+		MCAODC_09395	0.27	-1.0
1,875,032	+		MCAODC_09395	0.27	-1.8
1,875,032	+		MCAODC_09395	0.27	-2.2
1,875,033	-		MCAODC_09395	0.27	+0.5
1,875,194	+		MCAODC_09395	0.52	-0.4
1,875,195	-		MCAODC_09395	0.52	-2.0
1,875,211	+		MCAODC_09395	0.54	+0.4
1,875,212	-		MCAODC_09395	0.55	-1.1
1,875,248	+		MCAODC_09395	0.60	+1.0
1,875,248	+		MCAODC_09395	0.60	-0.3
1,875,329	-		MCAODC_09395	0.72	+0.1
1,875,329	-		MCAODC_09395	0.72	+0.4
1,875,356	+		MCAODC_09395	0.76	+0.8
1,875,357	-		MCAODC_09395	0.77	+0.3
1,875,357	-		MCAODC_09395	0.77	-0.4
1,875,378	+		MCAODC_09395	0.80	-2.0
1,875,378	+		MCAODC_09395	0.80	-0.7
1,875,378	+		MCAODC_09395	0.80	+0.8
1,875,378	+		MCAODC_09395	0.80	+1.0
1,875,379	-		MCAODC_09395	0.80	-0.0
1,875,379	-		MCAODC_09395	0.80	-0.9
1,875,379	-		MCAODC_09395	0.80	+1.1
1,875,388	+		MCAODC_09395	0.81	-0.6
1,875,390	+		MCAODC_09395	0.82	-0.1
1,875,391	-		MCAODC_09395	0.82	+0.2
1,875,391	-		MCAODC_09395	0.82	+3.0
1,875,391	-		MCAODC_09395	0.82	-0.6
1,875,448	+				-0.3
1,875,449	-				+0.7
1,875,449	-				+0.7
1,875,535	-				-0.8
1,875,544	+				-0.1
1,875,545	-				-0.3
1,875,548	-				-2.6
1,875,559	+				+0.5
1,875,559	+				-1.2
1,875,560	-				+0.0
1,875,572	-				+0.8
1,875,579	+				-0.8
1,875,600	-				-1.0
1,875,618	-				-0.2
1,875,625	+				-1.5
1,875,626	-				-0.4
1,875,626	-				-1.4
1,875,646	+				+0.3
1,875,658	+				-1.2
1,875,659	-				-1.2
1,875,659	-				+0.4
1,875,682	+				+0.2
1,875,683	-				+0.1
1,875,808	+	ygiW	MCAODC_09400	0.37	+0.9
1,875,809	-	ygiW	MCAODC_09400	0.37	-0.6