Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_03655 and yjbE are separated by 113 nucleotides yjbE and pgi are separated by 512 nucleotides pgi and lysC are separated by 524 nucleotides
MCAODC_03655: MCAODC_03655 - Lipoprotein yjbF, at 734,737 to 735,375
_03655
MCAODC_03660: yjbE - Uncharacterized protein YjbE, at 735,489 to 735,731
yjbE
MCAODC_03675: pgi - glucose-6-phosphate isomerase, at 736,244 to 737,893
pgi
MCAODC_03680: lysC - lysine-sensitive aspartokinase 3, at 738,418 to 739,767
lysC
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 735.340 kb on + strand at 735.341 kb on - strand at 735.341 kb on - strand at 735.341 kb on - strand at 735.352 kb on - strand at 735.400 kb on - strand at 735.400 kb on - strand at 735.424 kb on + strand at 735.424 kb on + strand at 735.425 kb on - strand at 735.436 kb on + strand at 735.436 kb on + strand at 735.436 kb on + strand at 735.437 kb on - strand at 735.443 kb on - strand at 735.478 kb on + strand at 735.478 kb on + strand at 735.479 kb on - strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.487 kb on + strand at 735.488 kb on - strand at 735.488 kb on - strand at 735.490 kb on + strand at 735.491 kb on - strand at 735.530 kb on + strand, within yjbE at 735.530 kb on + strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.661 kb on - strand, within yjbE at 735.715 kb on + strand at 735.796 kb on - strand at 736.057 kb on + strand at 736.083 kb on + strand at 736.096 kb on + strand at 736.097 kb on - strand at 736.097 kb on - strand at 736.103 kb on + strand at 736.104 kb on - strand at 736.121 kb on + strand at 736.121 kb on + strand at 736.121 kb on + strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.122 kb on - strand at 736.125 kb on + strand at 736.125 kb on + strand at 736.151 kb on - strand at 736.215 kb on + strand at 736.215 kb on + strand at 736.219 kb on + strand at 736.261 kb on + strand at 736.428 kb on + strand, within pgi at 736.429 kb on - strand, within pgi at 736.481 kb on - strand, within pgi at 736.481 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.528 kb on - strand, within pgi at 736.591 kb on + strand, within pgi at 736.627 kb on + strand, within pgi at 736.728 kb on + strand, within pgi at 736.768 kb on + strand, within pgi at 736.815 kb on + strand, within pgi at 736.815 kb on + strand, within pgi at 736.815 kb on + strand, within pgi at 736.815 kb on + strand, within pgi at 736.815 kb on + strand, within pgi at 736.815 kb on + strand, within pgi at 736.816 kb on - strand, within pgi at 736.816 kb on - strand, within pgi at 736.816 kb on - strand, within pgi at 736.819 kb on + strand, within pgi at 736.820 kb on - strand, within pgi at 736.851 kb on + strand, within pgi at 736.851 kb on + strand, within pgi at 736.870 kb on + strand, within pgi at 736.870 kb on + strand, within pgi at 736.870 kb on + strand, within pgi at 736.870 kb on + strand, within pgi at 736.870 kb on + strand, within pgi at 736.870 kb on + strand, within pgi at 736.871 kb on - strand, within pgi at 736.871 kb on - strand, within pgi at 736.871 kb on - strand, within pgi at 736.872 kb on + strand, within pgi at 736.872 kb on + strand, within pgi at 736.873 kb on - strand, within pgi at 736.881 kb on + strand, within pgi at 736.923 kb on + strand, within pgi at 736.923 kb on + strand, within pgi at 736.924 kb on - strand, within pgi at 736.924 kb on - strand, within pgi at 737.131 kb on + strand, within pgi at 737.406 kb on + strand, within pgi at 737.406 kb on + strand, within pgi at 737.407 kb on - strand, within pgi at 737.407 kb on - strand, within pgi at 737.468 kb on - strand, within pgi at 737.469 kb on + strand, within pgi at 737.469 kb on + strand, within pgi at 737.491 kb on + strand, within pgi at 737.492 kb on - strand, within pgi at 737.545 kb on + strand, within pgi at 737.546 kb on - strand, within pgi at 737.546 kb on - strand, within pgi at 737.656 kb on + strand, within pgi at 737.736 kb on + strand at 737.819 kb on - strand at 737.900 kb on + strand at 737.900 kb on + strand at 737.901 kb on - strand at 737.901 kb on - strand at 737.971 kb on - strand at 737.984 kb on + strand at 737.996 kb on + strand at 738.021 kb on + strand at 738.022 kb on - strand at 738.025 kb on - strand at 738.033 kb on + strand at 738.034 kb on - strand at 738.034 kb on - strand at 738.034 kb on - strand at 738.101 kb on + strand at 738.101 kb on + strand at 738.101 kb on + strand at 738.105 kb on + strand at 738.107 kb on + strand at 738.107 kb on + strand at 738.107 kb on + strand at 738.107 kb on + strand at 738.113 kb on + strand at 738.113 kb on + strand at 738.114 kb on - strand at 738.114 kb on - strand at 738.117 kb on - strand at 738.117 kb on - strand at 738.117 kb on - strand at 738.157 kb on + strand at 738.157 kb on + strand at 738.158 kb on - strand at 738.158 kb on - strand at 738.158 kb on - strand at 738.330 kb on + strand at 738.341 kb on + strand at 738.341 kb on + strand at 738.413 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.417 kb on + strand at 738.418 kb on - strand at 738.418 kb on - strand at 738.418 kb on - strand at 738.418 kb on - strand at 738.418 kb on - strand at 738.459 kb on - strand at 738.521 kb on + strand at 738.522 kb on - strand at 738.522 kb on - strand at 738.522 kb on - strand at 738.547 kb on - strand at 738.547 kb on - strand at 738.552 kb on + strand at 738.552 kb on + strand at 738.553 kb on - strand, within lysC at 738.615 kb on + strand, within lysC at 738.702 kb on + strand, within lysC at 738.702 kb on + strand, within lysC at 738.702 kb on + strand, within lysC at 738.703 kb on - strand, within lysC at 738.842 kb on + strand, within lysC at 738.842 kb on + strand, within lysC at 738.843 kb on - strand, within lysC at 738.843 kb on - strand, within lysC at 738.846 kb on + strand, within lysC at 738.847 kb on - strand, within lysC at 738.847 kb on - strand, within lysC at 738.847 kb on - strand, within lysC at 738.847 kb on - strand, within lysC at 738.858 kb on + strand, within lysC at 738.893 kb on + strand, within lysC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 735,340 + -0.1 735,341 - +0.2 735,341 - -0.1 735,341 - -0.8 735,352 - +0.5 735,400 - -0.0 735,400 - -2.3 735,424 + -0.4 735,424 + +0.8 735,425 - -0.3 735,436 + +0.9 735,436 + -0.1 735,436 + +1.4 735,437 - -0.1 735,443 - -0.1 735,478 + +2.5 735,478 + +2.0 735,479 - +0.8 735,482 + -0.7 735,482 + +2.1 735,482 + -0.8 735,482 + +0.3 735,483 - +0.2 735,483 - +0.1 735,483 - +0.8 735,483 - -0.2 735,483 - -1.9 735,483 - +0.7 735,483 - -0.4 735,483 - +1.5 735,483 - +0.2 735,483 - +2.1 735,487 + -1.0 735,488 - +2.1 735,488 - -0.2 735,490 + -1.0 735,491 - -0.0 735,530 + yjbE MCAODC_03660 0.17 -1.2 735,530 + yjbE MCAODC_03660 0.17 +0.2 735,531 - yjbE MCAODC_03660 0.17 -0.1 735,531 - yjbE MCAODC_03660 0.17 -1.3 735,531 - yjbE MCAODC_03660 0.17 -1.6 735,661 - yjbE MCAODC_03660 0.71 -1.1 735,715 + -1.9 735,796 - -0.4 736,057 + +1.1 736,083 + -0.1 736,096 + -0.9 736,097 - +0.5 736,097 - +0.2 736,103 + -1.2 736,104 - -0.2 736,121 + -0.6 736,121 + +0.1 736,121 + -0.6 736,122 - +0.4 736,122 - -3.1 736,122 - -1.0 736,122 - -0.9 736,122 - -0.0 736,125 + +1.0 736,125 + +0.0 736,151 - -0.8 736,215 + +0.1 736,215 + -0.2 736,219 + +1.2 736,261 + -0.7 736,428 + pgi MCAODC_03675 0.11 -2.0 736,429 - pgi MCAODC_03675 0.11 -0.8 736,481 - pgi MCAODC_03675 0.14 -0.3 736,481 - pgi MCAODC_03675 0.14 +0.9 736,528 - pgi MCAODC_03675 0.17 -0.7 736,528 - pgi MCAODC_03675 0.17 -0.9 736,528 - pgi MCAODC_03675 0.17 -2.8 736,528 - pgi MCAODC_03675 0.17 -1.5 736,528 - pgi MCAODC_03675 0.17 -1.2 736,591 + pgi MCAODC_03675 0.21 +1.9 736,627 + pgi MCAODC_03675 0.23 -0.6 736,728 + pgi MCAODC_03675 0.29 -2.4 736,768 + pgi MCAODC_03675 0.32 -2.4 736,815 + pgi MCAODC_03675 0.35 -0.4 736,815 + pgi MCAODC_03675 0.35 +0.3 736,815 + pgi MCAODC_03675 0.35 +0.1 736,815 + pgi MCAODC_03675 0.35 -0.1 736,815 + pgi MCAODC_03675 0.35 -0.1 736,815 + pgi MCAODC_03675 0.35 -1.7 736,816 - pgi MCAODC_03675 0.35 -2.5 736,816 - pgi MCAODC_03675 0.35 -0.3 736,816 - pgi MCAODC_03675 0.35 -1.8 736,819 + pgi MCAODC_03675 0.35 +1.3 736,820 - pgi MCAODC_03675 0.35 -1.7 736,851 + pgi MCAODC_03675 0.37 -0.1 736,851 + pgi MCAODC_03675 0.37 -0.3 736,870 + pgi MCAODC_03675 0.38 +0.1 736,870 + pgi MCAODC_03675 0.38 +0.3 736,870 + pgi MCAODC_03675 0.38 -2.3 736,870 + pgi MCAODC_03675 0.38 -0.8 736,870 + pgi MCAODC_03675 0.38 -1.7 736,870 + pgi MCAODC_03675 0.38 -2.9 736,871 - pgi MCAODC_03675 0.38 -0.9 736,871 - pgi MCAODC_03675 0.38 +0.1 736,871 - pgi MCAODC_03675 0.38 -1.4 736,872 + pgi MCAODC_03675 0.38 +2.9 736,872 + pgi MCAODC_03675 0.38 -1.2 736,873 - pgi MCAODC_03675 0.38 -1.8 736,881 + pgi MCAODC_03675 0.39 -0.7 736,923 + pgi MCAODC_03675 0.41 -1.7 736,923 + pgi MCAODC_03675 0.41 -1.8 736,924 - pgi MCAODC_03675 0.41 -2.4 736,924 - pgi MCAODC_03675 0.41 +0.5 737,131 + pgi MCAODC_03675 0.54 -3.1 737,406 + pgi MCAODC_03675 0.70 -3.1 737,406 + pgi MCAODC_03675 0.70 -1.8 737,407 - pgi MCAODC_03675 0.70 -0.8 737,407 - pgi MCAODC_03675 0.70 +0.7 737,468 - pgi MCAODC_03675 0.74 -1.2 737,469 + pgi MCAODC_03675 0.74 -2.2 737,469 + pgi MCAODC_03675 0.74 -0.3 737,491 + pgi MCAODC_03675 0.76 -1.9 737,492 - pgi MCAODC_03675 0.76 -1.8 737,545 + pgi MCAODC_03675 0.79 -2.3 737,546 - pgi MCAODC_03675 0.79 +0.1 737,546 - pgi MCAODC_03675 0.79 -1.8 737,656 + pgi MCAODC_03675 0.86 -1.1 737,736 + -1.3 737,819 - -2.0 737,900 + -1.4 737,900 + -2.7 737,901 - -2.2 737,901 - -2.4 737,971 - -0.6 737,984 + -0.3 737,996 + +0.3 738,021 + -1.7 738,022 - -0.2 738,025 - +0.2 738,033 + -0.7 738,034 - +0.6 738,034 - +3.1 738,034 - +0.1 738,101 + -1.5 738,101 + -1.0 738,101 + -0.5 738,105 + +0.0 738,107 + +0.7 738,107 + +0.8 738,107 + +0.1 738,107 + -0.4 738,113 + +0.6 738,113 + -0.9 738,114 - -0.4 738,114 - +0.7 738,117 - +0.1 738,117 - +0.7 738,117 - +0.5 738,157 + +1.1 738,157 + -0.4 738,158 - +0.1 738,158 - -0.7 738,158 - -0.2 738,330 + +0.5 738,341 + -1.3 738,341 + +0.2 738,413 + +0.6 738,417 + +0.6 738,417 + -1.9 738,417 + +0.1 738,417 + +0.2 738,417 + +1.0 738,417 + -1.3 738,417 + +0.6 738,417 + +1.4 738,417 + +0.1 738,417 + +0.6 738,417 + +0.8 738,418 - +0.7 738,418 - -0.2 738,418 - -0.2 738,418 - +0.6 738,418 - -0.3 738,459 - -1.3 738,521 + -0.3 738,522 - +0.3 738,522 - -1.0 738,522 - -0.1 738,547 - +0.9 738,547 - -0.2 738,552 + -0.1 738,552 + +0.9 738,553 - lysC MCAODC_03680 0.10 -0.8 738,615 + lysC MCAODC_03680 0.15 +0.6 738,702 + lysC MCAODC_03680 0.21 -2.5 738,702 + lysC MCAODC_03680 0.21 +1.9 738,702 + lysC MCAODC_03680 0.21 -0.3 738,703 - lysC MCAODC_03680 0.21 +2.1 738,842 + lysC MCAODC_03680 0.31 -2.1 738,842 + lysC MCAODC_03680 0.31 -1.8 738,843 - lysC MCAODC_03680 0.31 +0.2 738,843 - lysC MCAODC_03680 0.31 -1.9 738,846 + lysC MCAODC_03680 0.32 -0.5 738,847 - lysC MCAODC_03680 0.32 +0.9 738,847 - lysC MCAODC_03680 0.32 +0.4 738,847 - lysC MCAODC_03680 0.32 -0.2 738,847 - lysC MCAODC_03680 0.32 +1.9 738,858 + lysC MCAODC_03680 0.33 +0.8 738,893 + lysC MCAODC_03680 0.35 -0.8
Or see this region's nucleotide sequence