Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yprA and MCAODC_02195 overlap by 1 nucleotides MCAODC_02195 and zorA are separated by 211 nucleotides
MCAODC_02190: yprA - DEAD/DEAH box helicase, at 442,060 to 448,374
yprA
MCAODC_02195: MCAODC_02195 - hypothetical protein, at 448,374 to 451,733
_02195
MCAODC_02200: zorA - Zorya protein ZorA, at 451,945 to 453,597
zorA
Position (kb) 448
449
450
451
452 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 447.388 kb on + strand, within yprA at 447.457 kb on - strand, within yprA at 447.468 kb on + strand, within yprA at 447.469 kb on - strand, within yprA at 447.529 kb on - strand, within yprA at 447.529 kb on - strand, within yprA at 447.529 kb on - strand, within yprA at 447.529 kb on - strand, within yprA at 447.583 kb on + strand, within yprA at 447.584 kb on - strand, within yprA at 447.606 kb on + strand, within yprA at 447.607 kb on - strand, within yprA at 447.608 kb on + strand, within yprA at 447.608 kb on + strand, within yprA at 447.608 kb on + strand, within yprA at 447.608 kb on + strand, within yprA at 447.609 kb on - strand, within yprA at 447.609 kb on - strand, within yprA at 447.609 kb on - strand, within yprA at 447.609 kb on - strand, within yprA at 447.609 kb on - strand, within yprA at 447.612 kb on + strand, within yprA at 447.612 kb on + strand, within yprA at 447.613 kb on - strand, within yprA at 447.633 kb on + strand, within yprA at 447.634 kb on - strand, within yprA at 447.635 kb on + strand, within yprA at 447.635 kb on + strand, within yprA at 447.635 kb on + strand, within yprA at 447.635 kb on + strand, within yprA at 447.636 kb on - strand, within yprA at 447.636 kb on - strand, within yprA at 447.636 kb on - strand, within yprA at 447.636 kb on - strand, within yprA at 447.640 kb on + strand, within yprA at 447.641 kb on - strand, within yprA at 447.641 kb on - strand, within yprA at 447.641 kb on - strand, within yprA at 447.641 kb on - strand, within yprA at 447.679 kb on - strand, within yprA at 447.679 kb on - strand, within yprA at 447.693 kb on + strand, within yprA at 447.694 kb on - strand, within yprA at 447.696 kb on - strand, within yprA at 447.696 kb on - strand, within yprA at 447.711 kb on + strand, within yprA at 447.828 kb on + strand at 447.828 kb on + strand at 447.829 kb on - strand at 447.830 kb on + strand at 447.830 kb on + strand at 447.830 kb on + strand at 447.831 kb on - strand at 447.832 kb on + strand at 447.844 kb on + strand at 447.845 kb on - strand at 447.898 kb on - strand at 447.901 kb on + strand at 447.901 kb on + strand at 447.918 kb on - strand at 447.928 kb on - strand at 447.944 kb on - strand at 447.975 kb on + strand at 447.976 kb on - strand at 448.000 kb on - strand at 448.040 kb on - strand at 448.080 kb on + strand at 448.081 kb on - strand at 448.081 kb on - strand at 448.194 kb on + strand at 448.194 kb on + strand at 448.194 kb on + strand at 448.205 kb on - strand at 448.251 kb on - strand at 448.304 kb on - strand at 448.340 kb on - strand at 448.383 kb on + strand at 448.383 kb on + strand at 448.383 kb on + strand at 448.384 kb on - strand at 448.411 kb on + strand at 448.476 kb on + strand at 448.668 kb on + strand at 448.669 kb on - strand at 448.717 kb on - strand, within MCAODC_02195 at 448.717 kb on - strand, within MCAODC_02195 at 448.745 kb on + strand, within MCAODC_02195 at 448.747 kb on + strand, within MCAODC_02195 at 448.748 kb on - strand, within MCAODC_02195 at 448.751 kb on + strand, within MCAODC_02195 at 448.755 kb on + strand, within MCAODC_02195 at 448.831 kb on - strand, within MCAODC_02195 at 448.957 kb on + strand, within MCAODC_02195 at 448.965 kb on - strand, within MCAODC_02195 at 449.379 kb on - strand, within MCAODC_02195 at 449.387 kb on + strand, within MCAODC_02195 at 449.454 kb on + strand, within MCAODC_02195 at 449.550 kb on + strand, within MCAODC_02195 at 449.558 kb on + strand, within MCAODC_02195 at 449.559 kb on - strand, within MCAODC_02195 at 449.585 kb on + strand, within MCAODC_02195 at 449.767 kb on - strand, within MCAODC_02195 at 449.786 kb on + strand, within MCAODC_02195 at 449.787 kb on - strand, within MCAODC_02195 at 449.822 kb on + strand, within MCAODC_02195 at 450.485 kb on + strand, within MCAODC_02195 at 450.492 kb on + strand, within MCAODC_02195 at 450.492 kb on + strand, within MCAODC_02195 at 450.493 kb on - strand, within MCAODC_02195 at 450.621 kb on - strand, within MCAODC_02195 at 450.654 kb on + strand, within MCAODC_02195 at 450.731 kb on + strand, within MCAODC_02195 at 450.732 kb on - strand, within MCAODC_02195 at 450.732 kb on - strand, within MCAODC_02195 at 450.736 kb on - strand, within MCAODC_02195 at 450.739 kb on - strand, within MCAODC_02195 at 450.774 kb on + strand, within MCAODC_02195 at 450.774 kb on + strand, within MCAODC_02195 at 450.774 kb on + strand, within MCAODC_02195 at 450.774 kb on + strand, within MCAODC_02195 at 450.775 kb on - strand, within MCAODC_02195 at 450.845 kb on + strand, within MCAODC_02195 at 450.846 kb on - strand, within MCAODC_02195 at 450.867 kb on + strand, within MCAODC_02195 at 450.868 kb on - strand, within MCAODC_02195 at 450.879 kb on - strand, within MCAODC_02195 at 450.962 kb on + strand, within MCAODC_02195 at 450.962 kb on + strand, within MCAODC_02195 at 450.963 kb on - strand, within MCAODC_02195 at 450.975 kb on + strand, within MCAODC_02195 at 450.976 kb on - strand, within MCAODC_02195 at 450.997 kb on - strand, within MCAODC_02195 at 451.005 kb on + strand, within MCAODC_02195 at 451.073 kb on + strand, within MCAODC_02195 at 451.073 kb on + strand, within MCAODC_02195 at 451.073 kb on + strand, within MCAODC_02195 at 451.073 kb on + strand, within MCAODC_02195 at 451.074 kb on - strand, within MCAODC_02195 at 451.074 kb on - strand, within MCAODC_02195 at 451.074 kb on - strand, within MCAODC_02195 at 451.074 kb on - strand, within MCAODC_02195 at 451.074 kb on - strand, within MCAODC_02195 at 451.074 kb on - strand, within MCAODC_02195 at 451.077 kb on + strand, within MCAODC_02195 at 451.077 kb on + strand, within MCAODC_02195 at 451.078 kb on - strand, within MCAODC_02195 at 451.118 kb on + strand, within MCAODC_02195 at 451.119 kb on - strand, within MCAODC_02195 at 451.122 kb on + strand, within MCAODC_02195 at 451.163 kb on - strand, within MCAODC_02195 at 451.261 kb on + strand, within MCAODC_02195 at 451.261 kb on + strand, within MCAODC_02195 at 451.261 kb on + strand, within MCAODC_02195 at 451.261 kb on + strand, within MCAODC_02195 at 451.262 kb on - strand, within MCAODC_02195 at 451.263 kb on + strand, within MCAODC_02195 at 451.277 kb on - strand, within MCAODC_02195 at 451.281 kb on - strand, within MCAODC_02195 at 451.344 kb on - strand, within MCAODC_02195 at 451.344 kb on - strand, within MCAODC_02195 at 451.344 kb on - strand, within MCAODC_02195 at 451.352 kb on - strand, within MCAODC_02195 at 451.433 kb on - strand at 451.452 kb on - strand at 451.475 kb on + strand at 451.475 kb on + strand at 451.476 kb on - strand at 451.519 kb on + strand at 451.519 kb on + strand at 451.520 kb on - strand at 451.520 kb on - strand at 451.521 kb on + strand at 451.521 kb on + strand at 451.521 kb on + strand at 451.522 kb on - strand at 451.526 kb on + strand at 451.527 kb on - strand at 451.527 kb on - strand at 451.530 kb on + strand at 451.531 kb on - strand at 451.582 kb on + strand at 451.583 kb on - strand at 451.583 kb on - strand at 451.583 kb on - strand at 451.583 kb on - strand at 451.586 kb on + strand at 451.586 kb on + strand at 451.587 kb on - strand at 451.587 kb on - strand at 451.587 kb on - strand at 451.587 kb on - strand at 451.587 kb on - strand at 451.593 kb on + strand at 451.594 kb on - strand at 451.619 kb on + strand at 451.620 kb on - strand at 451.625 kb on + strand at 451.639 kb on + strand at 451.639 kb on + strand at 451.639 kb on + strand at 451.640 kb on - strand at 451.640 kb on - strand at 451.640 kb on - strand at 451.640 kb on - strand at 451.640 kb on - strand at 451.640 kb on - strand at 451.640 kb on - strand at 451.641 kb on + strand at 451.641 kb on + strand at 451.641 kb on + strand at 451.691 kb on + strand at 451.692 kb on - strand at 451.692 kb on - strand at 451.692 kb on - strand at 451.749 kb on + strand at 451.749 kb on + strand at 451.767 kb on - strand at 451.769 kb on + strand at 451.770 kb on - strand at 451.777 kb on + strand at 451.825 kb on - strand at 451.825 kb on - strand at 451.825 kb on - strand at 451.845 kb on - strand at 451.859 kb on + strand at 451.931 kb on - strand at 451.990 kb on - strand at 452.005 kb on - strand at 452.005 kb on - strand at 452.341 kb on - strand, within zorA at 452.441 kb on + strand, within zorA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 447,388 + yprA MCAODC_02190 0.84 -0.1 447,457 - yprA MCAODC_02190 0.85 -2.0 447,468 + yprA MCAODC_02190 0.86 -3.0 447,469 - yprA MCAODC_02190 0.86 -0.7 447,529 - yprA MCAODC_02190 0.87 -2.3 447,529 - yprA MCAODC_02190 0.87 -0.6 447,529 - yprA MCAODC_02190 0.87 -3.1 447,529 - yprA MCAODC_02190 0.87 -0.8 447,583 + yprA MCAODC_02190 0.87 -1.9 447,584 - yprA MCAODC_02190 0.87 -1.0 447,606 + yprA MCAODC_02190 0.88 -1.3 447,607 - yprA MCAODC_02190 0.88 -0.7 447,608 + yprA MCAODC_02190 0.88 -2.5 447,608 + yprA MCAODC_02190 0.88 -1.5 447,608 + yprA MCAODC_02190 0.88 -2.2 447,608 + yprA MCAODC_02190 0.88 +0.1 447,609 - yprA MCAODC_02190 0.88 -2.8 447,609 - yprA MCAODC_02190 0.88 -2.1 447,609 - yprA MCAODC_02190 0.88 -0.8 447,609 - yprA MCAODC_02190 0.88 -2.7 447,609 - yprA MCAODC_02190 0.88 -2.2 447,612 + yprA MCAODC_02190 0.88 -0.3 447,612 + yprA MCAODC_02190 0.88 -1.8 447,613 - yprA MCAODC_02190 0.88 -1.6 447,633 + yprA MCAODC_02190 0.88 -1.8 447,634 - yprA MCAODC_02190 0.88 -1.7 447,635 + yprA MCAODC_02190 0.88 -3.0 447,635 + yprA MCAODC_02190 0.88 -2.1 447,635 + yprA MCAODC_02190 0.88 -1.5 447,635 + yprA MCAODC_02190 0.88 -3.0 447,636 - yprA MCAODC_02190 0.88 -2.0 447,636 - yprA MCAODC_02190 0.88 -2.4 447,636 - yprA MCAODC_02190 0.88 -3.0 447,636 - yprA MCAODC_02190 0.88 -0.8 447,640 + yprA MCAODC_02190 0.88 -2.0 447,641 - yprA MCAODC_02190 0.88 -1.0 447,641 - yprA MCAODC_02190 0.88 -2.8 447,641 - yprA MCAODC_02190 0.88 -2.2 447,641 - yprA MCAODC_02190 0.88 -1.5 447,679 - yprA MCAODC_02190 0.89 -1.9 447,679 - yprA MCAODC_02190 0.89 -2.1 447,693 + yprA MCAODC_02190 0.89 -4.2 447,694 - yprA MCAODC_02190 0.89 -0.9 447,696 - yprA MCAODC_02190 0.89 -0.5 447,696 - yprA MCAODC_02190 0.89 -2.4 447,711 + yprA MCAODC_02190 0.89 -0.1 447,828 + -1.5 447,828 + -2.4 447,829 - -1.6 447,830 + +0.9 447,830 + -0.6 447,830 + +0.2 447,831 - +0.5 447,832 + -1.6 447,844 + -1.9 447,845 - -3.2 447,898 - -1.2 447,901 + -1.7 447,901 + -0.3 447,918 - -1.0 447,928 - -2.4 447,944 - -2.7 447,975 + -3.3 447,976 - -0.5 448,000 - -2.3 448,040 - +0.2 448,080 + -1.1 448,081 - -0.8 448,081 - -3.6 448,194 + -1.4 448,194 + -0.7 448,194 + -1.9 448,205 - -3.2 448,251 - -0.1 448,304 - -3.2 448,340 - -0.8 448,383 + -1.2 448,383 + -1.9 448,383 + -2.4 448,384 - -0.9 448,411 + -3.0 448,476 + +1.3 448,668 + -3.0 448,669 - -2.6 448,717 - MCAODC_02195 0.10 -2.6 448,717 - MCAODC_02195 0.10 -3.3 448,745 + MCAODC_02195 0.11 -1.0 448,747 + MCAODC_02195 0.11 -1.8 448,748 - MCAODC_02195 0.11 -3.5 448,751 + MCAODC_02195 0.11 -3.0 448,755 + MCAODC_02195 0.11 -2.5 448,831 - MCAODC_02195 0.14 -2.2 448,957 + MCAODC_02195 0.17 -0.8 448,965 - MCAODC_02195 0.18 -0.6 449,379 - MCAODC_02195 0.30 -3.2 449,387 + MCAODC_02195 0.30 -3.3 449,454 + MCAODC_02195 0.32 -3.4 449,550 + MCAODC_02195 0.35 -2.7 449,558 + MCAODC_02195 0.35 -0.9 449,559 - MCAODC_02195 0.35 -3.1 449,585 + MCAODC_02195 0.36 -1.4 449,767 - MCAODC_02195 0.41 -4.5 449,786 + MCAODC_02195 0.42 -2.6 449,787 - MCAODC_02195 0.42 -1.4 449,822 + MCAODC_02195 0.43 -1.6 450,485 + MCAODC_02195 0.63 +0.1 450,492 + MCAODC_02195 0.63 -3.1 450,492 + MCAODC_02195 0.63 -2.9 450,493 - MCAODC_02195 0.63 -0.6 450,621 - MCAODC_02195 0.67 -3.9 450,654 + MCAODC_02195 0.68 -2.2 450,731 + MCAODC_02195 0.70 +0.4 450,732 - MCAODC_02195 0.70 -2.2 450,732 - MCAODC_02195 0.70 -0.5 450,736 - MCAODC_02195 0.70 -3.5 450,739 - MCAODC_02195 0.70 -2.3 450,774 + MCAODC_02195 0.71 -1.6 450,774 + MCAODC_02195 0.71 -3.4 450,774 + MCAODC_02195 0.71 -2.3 450,774 + MCAODC_02195 0.71 -1.0 450,775 - MCAODC_02195 0.71 -0.7 450,845 + MCAODC_02195 0.74 -0.5 450,846 - MCAODC_02195 0.74 -0.7 450,867 + MCAODC_02195 0.74 +1.9 450,868 - MCAODC_02195 0.74 -2.4 450,879 - MCAODC_02195 0.75 -0.6 450,962 + MCAODC_02195 0.77 -2.6 450,962 + MCAODC_02195 0.77 +0.6 450,963 - MCAODC_02195 0.77 -2.0 450,975 + MCAODC_02195 0.77 -1.9 450,976 - MCAODC_02195 0.77 -1.2 450,997 - MCAODC_02195 0.78 -0.9 451,005 + MCAODC_02195 0.78 -1.1 451,073 + MCAODC_02195 0.80 -1.0 451,073 + MCAODC_02195 0.80 -0.9 451,073 + MCAODC_02195 0.80 -2.8 451,073 + MCAODC_02195 0.80 -3.6 451,074 - MCAODC_02195 0.80 -0.3 451,074 - MCAODC_02195 0.80 -0.1 451,074 - MCAODC_02195 0.80 -2.8 451,074 - MCAODC_02195 0.80 -1.4 451,074 - MCAODC_02195 0.80 -2.2 451,074 - MCAODC_02195 0.80 -1.7 451,077 + MCAODC_02195 0.80 -1.9 451,077 + MCAODC_02195 0.80 -0.6 451,078 - MCAODC_02195 0.80 -1.8 451,118 + MCAODC_02195 0.82 -2.6 451,119 - MCAODC_02195 0.82 -1.7 451,122 + MCAODC_02195 0.82 -3.8 451,163 - MCAODC_02195 0.83 +1.4 451,261 + MCAODC_02195 0.86 -2.5 451,261 + MCAODC_02195 0.86 -2.0 451,261 + MCAODC_02195 0.86 -2.5 451,261 + MCAODC_02195 0.86 -3.4 451,262 - MCAODC_02195 0.86 -1.8 451,263 + MCAODC_02195 0.86 -2.3 451,277 - MCAODC_02195 0.86 -1.8 451,281 - MCAODC_02195 0.87 -2.6 451,344 - MCAODC_02195 0.88 -2.9 451,344 - MCAODC_02195 0.88 -1.4 451,344 - MCAODC_02195 0.88 -4.1 451,352 - MCAODC_02195 0.89 -1.4 451,433 - -3.9 451,452 - -1.7 451,475 + -1.7 451,475 + -3.9 451,476 - -2.0 451,519 + -1.4 451,519 + -0.3 451,520 - -2.7 451,520 - -1.2 451,521 + -1.4 451,521 + +1.5 451,521 + -1.2 451,522 - -0.8 451,526 + -2.7 451,527 - -1.3 451,527 - -3.7 451,530 + -1.7 451,531 - -1.6 451,582 + -2.8 451,583 - -2.0 451,583 - -1.8 451,583 - -2.8 451,583 - -2.7 451,586 + -3.6 451,586 + -2.5 451,587 - -1.6 451,587 - -1.5 451,587 - -2.1 451,587 - -2.7 451,587 - -3.0 451,593 + +0.6 451,594 - -2.2 451,619 + -2.5 451,620 - -3.4 451,625 + -2.8 451,639 + -4.7 451,639 + -5.0 451,639 + -3.0 451,640 - -2.1 451,640 - -1.9 451,640 - -1.7 451,640 - +0.3 451,640 - -2.9 451,640 - -2.2 451,640 - -1.0 451,641 + -1.2 451,641 + -1.6 451,641 + -2.4 451,691 + -2.0 451,692 - -3.2 451,692 - -1.5 451,692 - -3.2 451,749 + -1.3 451,749 + -0.1 451,767 - -0.9 451,769 + -1.9 451,770 - -1.2 451,777 + -0.2 451,825 - +0.4 451,825 - -1.0 451,825 - +1.0 451,845 - -2.3 451,859 + +0.2 451,931 - +1.2 451,990 - +1.5 452,005 - -0.3 452,005 - -0.5 452,341 - zorA MCAODC_02200 0.24 +0.5 452,441 + zorA MCAODC_02200 0.30 +0.0
Or see this region's nucleotide sequence