Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeA and hepA are separated by 2 nucleotides hepA and yprA are separated by 223 nucleotides
MCAODC_02180: yeeA - Site-specific DNA-methyltransferase (adenine-specific), at 434,041 to 438,975
yeeA
MCAODC_02185: hepA - helicase, at 438,978 to 441,836
hepA
MCAODC_02190: yprA - DEAD/DEAH box helicase, at 442,060 to 448,374
yprA
Position (kb) 438
439
440
441
442 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 437.981 kb on + strand, within yeeA at 437.982 kb on - strand, within yeeA at 437.982 kb on - strand, within yeeA at 437.982 kb on - strand, within yeeA at 438.002 kb on + strand, within yeeA at 438.002 kb on + strand, within yeeA at 438.002 kb on + strand, within yeeA at 438.003 kb on - strand, within yeeA at 438.008 kb on + strand, within yeeA at 438.008 kb on + strand, within yeeA at 438.009 kb on - strand, within yeeA at 438.009 kb on - strand, within yeeA at 438.009 kb on - strand, within yeeA at 438.009 kb on - strand, within yeeA at 438.054 kb on + strand, within yeeA at 438.060 kb on + strand, within yeeA at 438.060 kb on + strand, within yeeA at 438.060 kb on + strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.063 kb on - strand, within yeeA at 438.089 kb on + strand, within yeeA at 438.089 kb on + strand, within yeeA at 438.090 kb on - strand, within yeeA at 438.090 kb on - strand, within yeeA at 438.090 kb on - strand, within yeeA at 438.137 kb on + strand, within yeeA at 438.200 kb on + strand, within yeeA at 438.201 kb on - strand, within yeeA at 438.201 kb on - strand, within yeeA at 438.234 kb on + strand, within yeeA at 438.235 kb on - strand, within yeeA at 438.238 kb on + strand, within yeeA at 438.238 kb on + strand, within yeeA at 438.239 kb on - strand, within yeeA at 438.264 kb on + strand, within yeeA at 438.330 kb on + strand, within yeeA at 438.349 kb on + strand, within yeeA at 438.412 kb on - strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.474 kb on + strand, within yeeA at 438.475 kb on - strand, within yeeA at 438.475 kb on - strand, within yeeA at 438.475 kb on - strand, within yeeA at 438.475 kb on - strand, within yeeA at 438.475 kb on - strand, within yeeA at 438.511 kb on + strand at 438.599 kb on + strand at 438.600 kb on - strand at 438.624 kb on + strand at 438.624 kb on + strand at 438.654 kb on + strand at 438.780 kb on + strand at 438.781 kb on - strand at 438.927 kb on - strand at 438.933 kb on + strand at 438.934 kb on - strand at 438.957 kb on + strand at 438.957 kb on + strand at 438.958 kb on - strand at 438.958 kb on - strand at 439.008 kb on + strand at 439.018 kb on + strand at 439.019 kb on - strand at 439.019 kb on - strand at 439.062 kb on - strand at 439.063 kb on + strand at 439.063 kb on + strand at 439.063 kb on + strand at 439.063 kb on + strand at 439.063 kb on + strand at 439.064 kb on - strand at 439.064 kb on - strand at 439.064 kb on - strand at 439.064 kb on - strand at 439.064 kb on - strand at 439.106 kb on + strand at 439.107 kb on - strand at 439.260 kb on + strand at 439.260 kb on + strand at 439.281 kb on - strand, within hepA at 439.294 kb on - strand, within hepA at 439.316 kb on + strand, within hepA at 439.316 kb on + strand, within hepA at 439.371 kb on + strand, within hepA at 439.458 kb on - strand, within hepA at 439.513 kb on + strand, within hepA at 439.513 kb on + strand, within hepA at 439.513 kb on + strand, within hepA at 439.606 kb on + strand, within hepA at 439.684 kb on - strand, within hepA at 439.687 kb on + strand, within hepA at 439.687 kb on + strand, within hepA at 439.723 kb on - strand, within hepA at 439.772 kb on + strand, within hepA at 439.772 kb on + strand, within hepA at 439.773 kb on - strand, within hepA at 439.773 kb on - strand, within hepA at 439.775 kb on + strand, within hepA at 439.793 kb on - strand, within hepA at 439.799 kb on + strand, within hepA at 439.844 kb on - strand, within hepA at 439.917 kb on + strand, within hepA at 439.917 kb on + strand, within hepA at 439.918 kb on - strand, within hepA at 439.918 kb on - strand, within hepA at 439.918 kb on - strand, within hepA at 439.918 kb on - strand, within hepA at 440.127 kb on - strand, within hepA at 440.127 kb on - strand, within hepA at 440.198 kb on - strand, within hepA at 440.216 kb on + strand, within hepA at 440.216 kb on + strand, within hepA at 440.216 kb on + strand, within hepA at 440.217 kb on - strand, within hepA at 440.229 kb on + strand, within hepA at 440.230 kb on - strand, within hepA at 440.346 kb on - strand, within hepA at 440.373 kb on + strand, within hepA at 440.468 kb on + strand, within hepA at 440.564 kb on + strand, within hepA at 440.564 kb on + strand, within hepA at 440.709 kb on + strand, within hepA at 440.727 kb on + strand, within hepA at 440.727 kb on + strand, within hepA at 440.727 kb on + strand, within hepA at 440.728 kb on - strand, within hepA at 440.751 kb on - strand, within hepA at 440.751 kb on - strand, within hepA at 440.751 kb on - strand, within hepA at 440.806 kb on + strand, within hepA at 440.807 kb on - strand, within hepA at 440.852 kb on + strand, within hepA at 440.853 kb on - strand, within hepA at 440.942 kb on - strand, within hepA at 440.942 kb on - strand, within hepA at 441.041 kb on + strand, within hepA at 441.050 kb on + strand, within hepA at 441.119 kb on + strand, within hepA at 441.140 kb on + strand, within hepA at 441.140 kb on + strand, within hepA at 441.140 kb on + strand, within hepA at 441.141 kb on - strand, within hepA at 441.141 kb on - strand, within hepA at 441.144 kb on - strand, within hepA at 441.175 kb on + strand, within hepA at 441.197 kb on + strand, within hepA at 441.209 kb on + strand, within hepA at 441.209 kb on + strand, within hepA at 441.209 kb on + strand, within hepA at 441.210 kb on - strand, within hepA at 441.210 kb on - strand, within hepA at 441.210 kb on - strand, within hepA at 441.353 kb on + strand, within hepA at 441.432 kb on - strand, within hepA at 441.551 kb on + strand at 441.551 kb on + strand at 441.551 kb on + strand at 441.551 kb on + strand at 441.552 kb on - strand at 441.552 kb on - strand at 441.577 kb on - strand at 441.591 kb on - strand at 441.593 kb on - strand at 441.593 kb on - strand at 441.664 kb on - strand at 441.723 kb on - strand at 441.723 kb on - strand at 441.742 kb on + strand at 441.742 kb on + strand at 441.776 kb on + strand at 441.831 kb on - strand at 441.921 kb on + strand at 442.040 kb on - strand at 442.057 kb on + strand at 442.057 kb on + strand at 442.061 kb on + strand at 442.071 kb on + strand at 442.074 kb on + strand at 442.074 kb on + strand at 442.074 kb on + strand at 442.074 kb on + strand at 442.075 kb on - strand at 442.076 kb on + strand at 442.076 kb on + strand at 442.077 kb on - strand at 442.077 kb on - strand at 442.173 kb on + strand at 442.182 kb on + strand at 442.193 kb on + strand at 442.193 kb on + strand at 442.194 kb on - strand at 442.197 kb on + strand at 442.197 kb on + strand at 442.197 kb on + strand at 442.197 kb on + strand at 442.197 kb on + strand at 442.198 kb on - strand at 442.220 kb on + strand at 442.220 kb on + strand at 442.220 kb on + strand at 442.220 kb on + strand at 442.221 kb on - strand at 442.221 kb on - strand at 442.272 kb on + strand at 442.299 kb on + strand at 442.299 kb on + strand at 442.299 kb on + strand at 442.300 kb on - strand at 442.342 kb on + strand at 442.343 kb on - strand at 442.391 kb on + strand at 442.392 kb on - strand at 442.392 kb on - strand at 442.392 kb on - strand at 442.392 kb on - strand at 442.498 kb on + strand at 442.521 kb on + strand at 442.521 kb on + strand at 442.522 kb on - strand at 442.522 kb on - strand at 442.522 kb on - strand at 442.524 kb on + strand at 442.524 kb on + strand at 442.524 kb on + strand at 442.524 kb on + strand at 442.525 kb on - strand at 442.525 kb on - strand at 442.530 kb on - strand at 442.541 kb on + strand at 442.542 kb on - strand at 442.702 kb on + strand, within yprA at 442.717 kb on + strand, within yprA at 442.717 kb on + strand, within yprA at 442.718 kb on - strand, within yprA at 442.718 kb on - strand, within yprA at 442.718 kb on - strand, within yprA at 442.718 kb on - strand, within yprA at 442.765 kb on + strand, within yprA at 442.792 kb on + strand, within yprA at 442.792 kb on + strand, within yprA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 437,981 + yeeA MCAODC_02180 0.80 -4.3 437,982 - yeeA MCAODC_02180 0.80 -1.5 437,982 - yeeA MCAODC_02180 0.80 -3.6 437,982 - yeeA MCAODC_02180 0.80 -1.2 438,002 + yeeA MCAODC_02180 0.80 -2.5 438,002 + yeeA MCAODC_02180 0.80 -3.4 438,002 + yeeA MCAODC_02180 0.80 -2.0 438,003 - yeeA MCAODC_02180 0.80 -1.1 438,008 + yeeA MCAODC_02180 0.80 -0.1 438,008 + yeeA MCAODC_02180 0.80 -2.3 438,009 - yeeA MCAODC_02180 0.80 -0.7 438,009 - yeeA MCAODC_02180 0.80 -0.1 438,009 - yeeA MCAODC_02180 0.80 -2.2 438,009 - yeeA MCAODC_02180 0.80 -2.3 438,054 + yeeA MCAODC_02180 0.81 -2.1 438,060 + yeeA MCAODC_02180 0.81 -4.6 438,060 + yeeA MCAODC_02180 0.81 -2.9 438,060 + yeeA MCAODC_02180 0.81 -3.2 438,063 - yeeA MCAODC_02180 0.81 -2.6 438,063 - yeeA MCAODC_02180 0.81 +0.6 438,063 - yeeA MCAODC_02180 0.81 -3.6 438,063 - yeeA MCAODC_02180 0.81 -1.9 438,063 - yeeA MCAODC_02180 0.81 -3.9 438,063 - yeeA MCAODC_02180 0.81 -1.7 438,063 - yeeA MCAODC_02180 0.81 -1.6 438,063 - yeeA MCAODC_02180 0.81 -3.7 438,089 + yeeA MCAODC_02180 0.82 -2.3 438,089 + yeeA MCAODC_02180 0.82 -1.9 438,090 - yeeA MCAODC_02180 0.82 -3.9 438,090 - yeeA MCAODC_02180 0.82 -2.9 438,090 - yeeA MCAODC_02180 0.82 -4.2 438,137 + yeeA MCAODC_02180 0.83 -1.8 438,200 + yeeA MCAODC_02180 0.84 -3.2 438,201 - yeeA MCAODC_02180 0.84 -2.2 438,201 - yeeA MCAODC_02180 0.84 -0.1 438,234 + yeeA MCAODC_02180 0.85 -3.4 438,235 - yeeA MCAODC_02180 0.85 -3.5 438,238 + yeeA MCAODC_02180 0.85 -3.5 438,238 + yeeA MCAODC_02180 0.85 -0.4 438,239 - yeeA MCAODC_02180 0.85 -4.2 438,264 + yeeA MCAODC_02180 0.86 -0.5 438,330 + yeeA MCAODC_02180 0.87 -2.5 438,349 + yeeA MCAODC_02180 0.87 -3.7 438,412 - yeeA MCAODC_02180 0.89 -1.4 438,474 + yeeA MCAODC_02180 0.90 -3.7 438,474 + yeeA MCAODC_02180 0.90 -1.6 438,474 + yeeA MCAODC_02180 0.90 -3.4 438,474 + yeeA MCAODC_02180 0.90 -2.6 438,474 + yeeA MCAODC_02180 0.90 -2.7 438,474 + yeeA MCAODC_02180 0.90 -1.9 438,474 + yeeA MCAODC_02180 0.90 -3.6 438,475 - yeeA MCAODC_02180 0.90 -2.7 438,475 - yeeA MCAODC_02180 0.90 -4.0 438,475 - yeeA MCAODC_02180 0.90 -3.8 438,475 - yeeA MCAODC_02180 0.90 -1.6 438,475 - yeeA MCAODC_02180 0.90 -2.6 438,511 + -4.6 438,599 + -2.4 438,600 - -2.5 438,624 + -2.4 438,624 + -2.8 438,654 + -1.6 438,780 + -1.5 438,781 - -2.1 438,927 - -4.2 438,933 + -3.7 438,934 - -1.8 438,957 + -2.3 438,957 + +0.9 438,958 - -1.7 438,958 - -1.8 439,008 + -3.3 439,018 + -0.0 439,019 - -2.1 439,019 - -3.8 439,062 - -1.6 439,063 + -2.7 439,063 + +0.4 439,063 + -0.3 439,063 + +0.3 439,063 + -1.4 439,064 - -3.1 439,064 - -3.7 439,064 - -1.8 439,064 - -3.5 439,064 - -3.7 439,106 + -2.0 439,107 - -1.1 439,260 + -3.7 439,260 + -3.3 439,281 - hepA MCAODC_02185 0.11 -0.8 439,294 - hepA MCAODC_02185 0.11 -1.7 439,316 + hepA MCAODC_02185 0.12 -1.3 439,316 + hepA MCAODC_02185 0.12 -1.4 439,371 + hepA MCAODC_02185 0.14 -3.3 439,458 - hepA MCAODC_02185 0.17 -2.6 439,513 + hepA MCAODC_02185 0.19 -1.7 439,513 + hepA MCAODC_02185 0.19 -3.6 439,513 + hepA MCAODC_02185 0.19 -0.7 439,606 + hepA MCAODC_02185 0.22 -2.5 439,684 - hepA MCAODC_02185 0.25 -1.6 439,687 + hepA MCAODC_02185 0.25 -3.0 439,687 + hepA MCAODC_02185 0.25 -1.4 439,723 - hepA MCAODC_02185 0.26 -1.4 439,772 + hepA MCAODC_02185 0.28 -3.7 439,772 + hepA MCAODC_02185 0.28 -3.2 439,773 - hepA MCAODC_02185 0.28 -3.3 439,773 - hepA MCAODC_02185 0.28 -0.3 439,775 + hepA MCAODC_02185 0.28 -2.4 439,793 - hepA MCAODC_02185 0.29 -2.4 439,799 + hepA MCAODC_02185 0.29 +2.9 439,844 - hepA MCAODC_02185 0.30 -0.6 439,917 + hepA MCAODC_02185 0.33 -1.2 439,917 + hepA MCAODC_02185 0.33 -2.2 439,918 - hepA MCAODC_02185 0.33 -2.7 439,918 - hepA MCAODC_02185 0.33 -1.4 439,918 - hepA MCAODC_02185 0.33 -5.6 439,918 - hepA MCAODC_02185 0.33 +0.9 440,127 - hepA MCAODC_02185 0.40 -4.8 440,127 - hepA MCAODC_02185 0.40 -2.0 440,198 - hepA MCAODC_02185 0.43 -2.6 440,216 + hepA MCAODC_02185 0.43 -2.6 440,216 + hepA MCAODC_02185 0.43 -1.8 440,216 + hepA MCAODC_02185 0.43 -1.6 440,217 - hepA MCAODC_02185 0.43 -1.8 440,229 + hepA MCAODC_02185 0.44 -3.4 440,230 - hepA MCAODC_02185 0.44 -4.3 440,346 - hepA MCAODC_02185 0.48 -2.2 440,373 + hepA MCAODC_02185 0.49 -0.8 440,468 + hepA MCAODC_02185 0.52 -2.4 440,564 + hepA MCAODC_02185 0.55 -2.8 440,564 + hepA MCAODC_02185 0.55 +1.3 440,709 + hepA MCAODC_02185 0.61 -3.6 440,727 + hepA MCAODC_02185 0.61 -2.1 440,727 + hepA MCAODC_02185 0.61 -3.1 440,727 + hepA MCAODC_02185 0.61 -5.1 440,728 - hepA MCAODC_02185 0.61 -1.9 440,751 - hepA MCAODC_02185 0.62 -1.6 440,751 - hepA MCAODC_02185 0.62 -0.7 440,751 - hepA MCAODC_02185 0.62 -0.3 440,806 + hepA MCAODC_02185 0.64 -4.3 440,807 - hepA MCAODC_02185 0.64 -1.0 440,852 + hepA MCAODC_02185 0.66 -4.7 440,853 - hepA MCAODC_02185 0.66 -4.1 440,942 - hepA MCAODC_02185 0.69 -4.1 440,942 - hepA MCAODC_02185 0.69 -1.7 441,041 + hepA MCAODC_02185 0.72 -1.6 441,050 + hepA MCAODC_02185 0.72 -1.6 441,119 + hepA MCAODC_02185 0.75 -1.2 441,140 + hepA MCAODC_02185 0.76 -2.9 441,140 + hepA MCAODC_02185 0.76 -2.4 441,140 + hepA MCAODC_02185 0.76 -4.4 441,141 - hepA MCAODC_02185 0.76 -3.2 441,141 - hepA MCAODC_02185 0.76 -2.5 441,144 - hepA MCAODC_02185 0.76 -2.2 441,175 + hepA MCAODC_02185 0.77 -1.4 441,197 + hepA MCAODC_02185 0.78 -3.0 441,209 + hepA MCAODC_02185 0.78 -4.1 441,209 + hepA MCAODC_02185 0.78 -0.7 441,209 + hepA MCAODC_02185 0.78 -3.9 441,210 - hepA MCAODC_02185 0.78 +1.9 441,210 - hepA MCAODC_02185 0.78 -2.4 441,210 - hepA MCAODC_02185 0.78 -4.0 441,353 + hepA MCAODC_02185 0.83 -0.8 441,432 - hepA MCAODC_02185 0.86 +0.6 441,551 + -5.2 441,551 + -3.3 441,551 + -3.8 441,551 + -1.6 441,552 - -2.1 441,552 - -2.3 441,577 - -2.5 441,591 - -1.5 441,593 - -1.2 441,593 - -3.3 441,664 - -4.1 441,723 - -0.7 441,723 - +0.3 441,742 + -1.8 441,742 + -1.8 441,776 + -2.7 441,831 - -2.2 441,921 + -1.4 442,040 - -0.7 442,057 + +0.2 442,057 + -0.5 442,061 + -0.0 442,071 + -3.3 442,074 + -3.0 442,074 + -1.9 442,074 + -0.7 442,074 + -1.8 442,075 - +0.8 442,076 + -2.5 442,076 + -2.0 442,077 - +0.2 442,077 - -0.7 442,173 + -1.3 442,182 + -3.5 442,193 + -0.6 442,193 + +1.1 442,194 - -0.8 442,197 + -2.2 442,197 + -2.4 442,197 + -1.3 442,197 + -2.7 442,197 + -3.5 442,198 - -1.1 442,220 + -2.5 442,220 + -2.3 442,220 + -2.8 442,220 + -1.4 442,221 - -1.6 442,221 - +1.2 442,272 + -2.2 442,299 + -2.2 442,299 + -1.7 442,299 + -1.5 442,300 - -2.7 442,342 + -1.3 442,343 - -1.1 442,391 + -2.7 442,392 - -2.4 442,392 - -0.3 442,392 - -2.3 442,392 - -1.3 442,498 + -2.4 442,521 + -4.0 442,521 + +0.9 442,522 - -0.5 442,522 - -1.9 442,522 - -2.4 442,524 + -2.0 442,524 + -0.6 442,524 + -0.7 442,524 + -2.2 442,525 - +0.3 442,525 - -2.7 442,530 - -4.0 442,541 + -1.9 442,542 - -1.0 442,702 + yprA MCAODC_02190 0.10 -3.8 442,717 + yprA MCAODC_02190 0.10 -0.8 442,717 + yprA MCAODC_02190 0.10 -3.4 442,718 - yprA MCAODC_02190 0.10 -0.9 442,718 - yprA MCAODC_02190 0.10 -0.0 442,718 - yprA MCAODC_02190 0.10 +0.9 442,718 - yprA MCAODC_02190 0.10 -1.2 442,765 + yprA MCAODC_02190 0.11 -1.2 442,792 + yprA MCAODC_02190 0.12 -2.8 442,792 + yprA MCAODC_02190 0.12 -1.5
Or see this region's nucleotide sequence