Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02150 and MCAODC_02155 are separated by 101 nucleotides MCAODC_02155 and MCAODC_02160 are separated by 159 nucleotides MCAODC_02160 and MCAODC_02165 are separated by 369 nucleotides MCAODC_02165 and uvrD are separated by 128 nucleotides uvrD and yprA overlap by 4 nucleotides
MCAODC_02150: MCAODC_02150 - Transposase, IS4 family protein, at 424,391 to 424,636
_02150
MCAODC_02155: MCAODC_02155 - Transposase, at 424,738 to 424,824
_02155
MCAODC_02160: MCAODC_02160 - Orf, at 424,984 to 425,022
_02160
MCAODC_02165: MCAODC_02165 - Orf, at 425,392 to 425,460
_02165
MCAODC_02170: uvrD - DNA helicase, at 425,589 to 427,703
uvrD
MCAODC_02175: yprA - DEAD/DEAH box helicase, at 427,700 to 434,041
yprA
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 424.608 kb on + strand, within MCAODC_02150 at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.631 kb on + strand at 424.708 kb on - strand at 424.708 kb on - strand at 424.742 kb on + strand at 424.864 kb on + strand at 424.907 kb on + strand at 424.908 kb on - strand at 425.181 kb on - strand at 425.245 kb on + strand at 425.271 kb on - strand at 425.321 kb on + strand at 425.321 kb on + strand at 425.361 kb on + strand at 425.411 kb on - strand, within MCAODC_02165 at 425.438 kb on - strand, within MCAODC_02165 at 425.546 kb on - strand at 425.585 kb on - strand at 425.587 kb on + strand at 425.587 kb on + strand at 425.646 kb on + strand at 425.647 kb on - strand at 425.688 kb on - strand at 425.691 kb on + strand at 425.692 kb on - strand at 425.692 kb on - strand at 425.802 kb on - strand, within uvrD at 425.867 kb on + strand, within uvrD at 425.867 kb on + strand, within uvrD at 425.868 kb on - strand, within uvrD at 425.868 kb on - strand, within uvrD at 425.924 kb on + strand, within uvrD at 425.924 kb on + strand, within uvrD at 425.936 kb on + strand, within uvrD at 426.033 kb on - strand, within uvrD at 426.057 kb on + strand, within uvrD at 426.057 kb on + strand, within uvrD at 426.067 kb on + strand, within uvrD at 426.067 kb on + strand, within uvrD at 426.067 kb on + strand, within uvrD at 426.163 kb on + strand, within uvrD at 426.167 kb on + strand, within uvrD at 426.168 kb on - strand, within uvrD at 426.168 kb on - strand, within uvrD at 426.230 kb on + strand, within uvrD at 426.239 kb on - strand, within uvrD at 426.243 kb on - strand, within uvrD at 426.243 kb on - strand, within uvrD at 426.305 kb on + strand, within uvrD at 426.311 kb on + strand, within uvrD at 426.311 kb on + strand, within uvrD at 426.312 kb on - strand, within uvrD at 426.312 kb on - strand, within uvrD at 426.312 kb on - strand, within uvrD at 426.360 kb on - strand, within uvrD at 426.361 kb on + strand, within uvrD at 426.361 kb on + strand, within uvrD at 426.366 kb on + strand, within uvrD at 426.367 kb on - strand, within uvrD at 426.398 kb on + strand, within uvrD at 426.509 kb on + strand, within uvrD at 426.510 kb on - strand, within uvrD at 426.602 kb on + strand, within uvrD at 426.643 kb on + strand, within uvrD at 426.643 kb on + strand, within uvrD at 426.643 kb on + strand, within uvrD at 426.644 kb on - strand, within uvrD at 426.644 kb on - strand, within uvrD at 426.679 kb on + strand, within uvrD at 426.679 kb on + strand, within uvrD at 426.680 kb on - strand, within uvrD at 426.681 kb on + strand, within uvrD at 426.698 kb on - strand, within uvrD at 426.711 kb on + strand, within uvrD at 426.712 kb on - strand, within uvrD at 426.821 kb on + strand, within uvrD at 426.822 kb on - strand, within uvrD at 426.837 kb on + strand, within uvrD at 426.854 kb on + strand, within uvrD at 426.855 kb on - strand, within uvrD at 426.873 kb on + strand, within uvrD at 426.914 kb on + strand, within uvrD at 426.915 kb on - strand, within uvrD at 426.990 kb on + strand, within uvrD at 426.990 kb on + strand, within uvrD at 426.990 kb on + strand, within uvrD at 426.991 kb on - strand, within uvrD at 426.991 kb on - strand, within uvrD at 427.067 kb on + strand, within uvrD at 427.067 kb on + strand, within uvrD at 427.089 kb on - strand, within uvrD at 427.127 kb on + strand, within uvrD at 427.150 kb on + strand, within uvrD at 427.203 kb on + strand, within uvrD at 427.203 kb on + strand, within uvrD at 427.204 kb on - strand, within uvrD at 427.220 kb on + strand, within uvrD at 427.220 kb on + strand, within uvrD at 427.220 kb on + strand, within uvrD at 427.220 kb on + strand, within uvrD at 427.221 kb on - strand, within uvrD at 427.303 kb on + strand, within uvrD at 427.356 kb on - strand, within uvrD at 427.357 kb on + strand, within uvrD at 427.357 kb on + strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.358 kb on - strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.361 kb on + strand, within uvrD at 427.362 kb on - strand, within uvrD at 427.362 kb on - strand, within uvrD at 427.362 kb on - strand, within uvrD at 427.362 kb on - strand, within uvrD at 427.364 kb on + strand, within uvrD at 427.365 kb on - strand, within uvrD at 427.365 kb on - strand, within uvrD at 427.429 kb on + strand, within uvrD at 427.429 kb on + strand, within uvrD at 427.430 kb on - strand, within uvrD at 427.430 kb on - strand, within uvrD at 427.430 kb on - strand, within uvrD at 427.446 kb on - strand, within uvrD at 427.463 kb on + strand, within uvrD at 427.463 kb on + strand, within uvrD at 427.464 kb on - strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.465 kb on + strand, within uvrD at 427.466 kb on - strand, within uvrD at 427.466 kb on - strand, within uvrD at 427.466 kb on - strand, within uvrD at 427.539 kb on - strand at 427.564 kb on + strand at 427.565 kb on - strand at 427.565 kb on - strand at 427.568 kb on + strand at 427.568 kb on + strand at 427.568 kb on + strand at 427.568 kb on + strand at 427.568 kb on + strand at 427.568 kb on + strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.569 kb on - strand at 427.577 kb on + strand at 427.802 kb on - strand at 427.855 kb on + strand at 427.944 kb on - strand at 428.039 kb on + strand at 428.096 kb on + strand at 428.097 kb on - strand at 428.149 kb on - strand at 428.149 kb on - strand at 428.167 kb on + strand at 428.232 kb on - strand at 428.269 kb on + strand at 428.269 kb on + strand at 428.269 kb on + strand at 428.270 kb on - strand at 428.270 kb on - strand at 428.325 kb on - strand at 428.359 kb on - strand, within yprA at 428.364 kb on + strand, within yprA at 428.364 kb on + strand, within yprA at 428.365 kb on - strand, within yprA at 428.444 kb on + strand, within yprA at 428.444 kb on + strand, within yprA at 428.445 kb on - strand, within yprA at 428.540 kb on - strand, within yprA at 428.540 kb on - strand, within yprA at 428.554 kb on + strand, within yprA at 428.556 kb on + strand, within yprA at 428.563 kb on + strand, within yprA at 428.563 kb on + strand, within yprA at 428.564 kb on - strand, within yprA at 428.584 kb on + strand, within yprA at 428.668 kb on + strand, within yprA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 424,608 + MCAODC_02150 0.88 +0.1 424,631 + +0.8 424,631 + -0.9 424,631 + +0.5 424,631 + -0.5 424,708 - -0.2 424,708 - +0.2 424,742 + +2.9 424,864 + -0.1 424,907 + +0.2 424,908 - +0.2 425,181 - +0.6 425,245 + -0.3 425,271 - -0.7 425,321 + +0.6 425,321 + -2.4 425,361 + +0.6 425,411 - MCAODC_02165 0.28 +0.4 425,438 - MCAODC_02165 0.67 +0.5 425,546 - -0.1 425,585 - +0.3 425,587 + -0.2 425,587 + +0.5 425,646 + -0.6 425,647 - -2.3 425,688 - -3.2 425,691 + -4.1 425,692 - -2.0 425,692 - -2.2 425,802 - uvrD MCAODC_02170 0.10 -1.5 425,867 + uvrD MCAODC_02170 0.13 -3.7 425,867 + uvrD MCAODC_02170 0.13 -0.7 425,868 - uvrD MCAODC_02170 0.13 -0.3 425,868 - uvrD MCAODC_02170 0.13 -0.8 425,924 + uvrD MCAODC_02170 0.16 -3.3 425,924 + uvrD MCAODC_02170 0.16 -1.2 425,936 + uvrD MCAODC_02170 0.16 -0.4 426,033 - uvrD MCAODC_02170 0.21 -3.7 426,057 + uvrD MCAODC_02170 0.22 -3.9 426,057 + uvrD MCAODC_02170 0.22 -2.5 426,067 + uvrD MCAODC_02170 0.23 +0.6 426,067 + uvrD MCAODC_02170 0.23 -3.8 426,067 + uvrD MCAODC_02170 0.23 -2.4 426,163 + uvrD MCAODC_02170 0.27 -1.3 426,167 + uvrD MCAODC_02170 0.27 -2.1 426,168 - uvrD MCAODC_02170 0.27 -1.3 426,168 - uvrD MCAODC_02170 0.27 -3.1 426,230 + uvrD MCAODC_02170 0.30 -1.6 426,239 - uvrD MCAODC_02170 0.31 -1.4 426,243 - uvrD MCAODC_02170 0.31 -2.4 426,243 - uvrD MCAODC_02170 0.31 -4.0 426,305 + uvrD MCAODC_02170 0.34 -3.8 426,311 + uvrD MCAODC_02170 0.34 -1.4 426,311 + uvrD MCAODC_02170 0.34 -2.0 426,312 - uvrD MCAODC_02170 0.34 -1.2 426,312 - uvrD MCAODC_02170 0.34 +1.3 426,312 - uvrD MCAODC_02170 0.34 -2.8 426,360 - uvrD MCAODC_02170 0.36 -4.7 426,361 + uvrD MCAODC_02170 0.37 -2.1 426,361 + uvrD MCAODC_02170 0.37 -4.0 426,366 + uvrD MCAODC_02170 0.37 -2.8 426,367 - uvrD MCAODC_02170 0.37 -3.3 426,398 + uvrD MCAODC_02170 0.38 -0.1 426,509 + uvrD MCAODC_02170 0.43 -2.8 426,510 - uvrD MCAODC_02170 0.44 +0.3 426,602 + uvrD MCAODC_02170 0.48 -2.4 426,643 + uvrD MCAODC_02170 0.50 -2.4 426,643 + uvrD MCAODC_02170 0.50 -4.3 426,643 + uvrD MCAODC_02170 0.50 -1.4 426,644 - uvrD MCAODC_02170 0.50 -2.8 426,644 - uvrD MCAODC_02170 0.50 -3.7 426,679 + uvrD MCAODC_02170 0.52 -1.6 426,679 + uvrD MCAODC_02170 0.52 -4.4 426,680 - uvrD MCAODC_02170 0.52 -2.6 426,681 + uvrD MCAODC_02170 0.52 -3.3 426,698 - uvrD MCAODC_02170 0.52 -2.3 426,711 + uvrD MCAODC_02170 0.53 -2.8 426,712 - uvrD MCAODC_02170 0.53 -1.6 426,821 + uvrD MCAODC_02170 0.58 +0.0 426,822 - uvrD MCAODC_02170 0.58 -0.9 426,837 + uvrD MCAODC_02170 0.59 -2.2 426,854 + uvrD MCAODC_02170 0.60 -1.1 426,855 - uvrD MCAODC_02170 0.60 -3.5 426,873 + uvrD MCAODC_02170 0.61 -1.7 426,914 + uvrD MCAODC_02170 0.63 -1.8 426,915 - uvrD MCAODC_02170 0.63 -2.2 426,990 + uvrD MCAODC_02170 0.66 -2.7 426,990 + uvrD MCAODC_02170 0.66 -2.4 426,990 + uvrD MCAODC_02170 0.66 -2.5 426,991 - uvrD MCAODC_02170 0.66 -4.5 426,991 - uvrD MCAODC_02170 0.66 -3.0 427,067 + uvrD MCAODC_02170 0.70 -1.4 427,067 + uvrD MCAODC_02170 0.70 -3.4 427,089 - uvrD MCAODC_02170 0.71 -3.5 427,127 + uvrD MCAODC_02170 0.73 -3.9 427,150 + uvrD MCAODC_02170 0.74 -6.1 427,203 + uvrD MCAODC_02170 0.76 -2.8 427,203 + uvrD MCAODC_02170 0.76 -2.0 427,204 - uvrD MCAODC_02170 0.76 -2.3 427,220 + uvrD MCAODC_02170 0.77 -2.0 427,220 + uvrD MCAODC_02170 0.77 -0.7 427,220 + uvrD MCAODC_02170 0.77 -2.6 427,220 + uvrD MCAODC_02170 0.77 -3.6 427,221 - uvrD MCAODC_02170 0.77 -4.0 427,303 + uvrD MCAODC_02170 0.81 -1.8 427,356 - uvrD MCAODC_02170 0.84 -3.1 427,357 + uvrD MCAODC_02170 0.84 -2.4 427,357 + uvrD MCAODC_02170 0.84 -4.0 427,358 - uvrD MCAODC_02170 0.84 -3.6 427,358 - uvrD MCAODC_02170 0.84 -4.3 427,358 - uvrD MCAODC_02170 0.84 -1.9 427,358 - uvrD MCAODC_02170 0.84 -1.1 427,358 - uvrD MCAODC_02170 0.84 -4.6 427,358 - uvrD MCAODC_02170 0.84 -3.6 427,358 - uvrD MCAODC_02170 0.84 -3.3 427,361 + uvrD MCAODC_02170 0.84 -3.3 427,361 + uvrD MCAODC_02170 0.84 -0.7 427,361 + uvrD MCAODC_02170 0.84 -1.0 427,361 + uvrD MCAODC_02170 0.84 -2.1 427,361 + uvrD MCAODC_02170 0.84 -3.2 427,361 + uvrD MCAODC_02170 0.84 -4.6 427,361 + uvrD MCAODC_02170 0.84 -1.1 427,361 + uvrD MCAODC_02170 0.84 -0.8 427,362 - uvrD MCAODC_02170 0.84 -3.8 427,362 - uvrD MCAODC_02170 0.84 -3.5 427,362 - uvrD MCAODC_02170 0.84 -2.7 427,362 - uvrD MCAODC_02170 0.84 -2.0 427,364 + uvrD MCAODC_02170 0.84 -1.9 427,365 - uvrD MCAODC_02170 0.84 -4.2 427,365 - uvrD MCAODC_02170 0.84 -2.6 427,429 + uvrD MCAODC_02170 0.87 -3.4 427,429 + uvrD MCAODC_02170 0.87 -2.3 427,430 - uvrD MCAODC_02170 0.87 -2.6 427,430 - uvrD MCAODC_02170 0.87 -2.7 427,430 - uvrD MCAODC_02170 0.87 -1.7 427,446 - uvrD MCAODC_02170 0.88 -5.1 427,463 + uvrD MCAODC_02170 0.89 -2.8 427,463 + uvrD MCAODC_02170 0.89 -2.5 427,464 - uvrD MCAODC_02170 0.89 -3.2 427,465 + uvrD MCAODC_02170 0.89 -0.4 427,465 + uvrD MCAODC_02170 0.89 -3.6 427,465 + uvrD MCAODC_02170 0.89 -3.3 427,465 + uvrD MCAODC_02170 0.89 -3.9 427,465 + uvrD MCAODC_02170 0.89 -0.6 427,465 + uvrD MCAODC_02170 0.89 -2.0 427,465 + uvrD MCAODC_02170 0.89 -3.0 427,466 - uvrD MCAODC_02170 0.89 -0.7 427,466 - uvrD MCAODC_02170 0.89 -3.8 427,466 - uvrD MCAODC_02170 0.89 +0.9 427,539 - -4.2 427,564 + +0.6 427,565 - -1.8 427,565 - -3.5 427,568 + -0.7 427,568 + -1.4 427,568 + -3.2 427,568 + -3.5 427,568 + -3.9 427,568 + -3.8 427,569 - -5.2 427,569 - -4.1 427,569 - -0.7 427,569 - -0.6 427,569 - -0.3 427,569 - -2.3 427,569 - -2.8 427,569 - -3.7 427,569 - -0.9 427,577 + -2.5 427,802 - -3.3 427,855 + -1.5 427,944 - -5.4 428,039 + -2.0 428,096 + -1.8 428,097 - +0.0 428,149 - -2.5 428,149 - -1.3 428,167 + -2.4 428,232 - -3.2 428,269 + -3.9 428,269 + -0.3 428,269 + -2.0 428,270 - -3.5 428,270 - -1.8 428,325 - -3.9 428,359 - yprA MCAODC_02175 0.10 -0.4 428,364 + yprA MCAODC_02175 0.10 -0.9 428,364 + yprA MCAODC_02175 0.10 -2.1 428,365 - yprA MCAODC_02175 0.10 -1.9 428,444 + yprA MCAODC_02175 0.12 -3.2 428,444 + yprA MCAODC_02175 0.12 -1.7 428,445 - yprA MCAODC_02175 0.12 -0.3 428,540 - yprA MCAODC_02175 0.13 -2.7 428,540 - yprA MCAODC_02175 0.13 -2.7 428,554 + yprA MCAODC_02175 0.13 -2.0 428,556 + yprA MCAODC_02175 0.13 -3.8 428,563 + yprA MCAODC_02175 0.14 -2.5 428,563 + yprA MCAODC_02175 0.14 -4.0 428,564 - yprA MCAODC_02175 0.14 -1.7 428,584 + yprA MCAODC_02175 0.14 -1.0 428,668 + yprA MCAODC_02175 0.15 -1.6
Or see this region's nucleotide sequence