Experiment: Bas06
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrA and thrL are separated by 80 nucleotides thrL and lasT are separated by 213 nucleotides
MCAODC_01625: thrA - bifunctional aspartate kinase/homoserine dehydrogenase I, at 314,374 to 316,836
thrA
MCAODC_01630: thrL - thr operon leader peptide, at 316,917 to 317,000
thrL
MCAODC_01635: lasT - tRNA/rRNA methyltransferase, at 317,214 to 317,900
lasT
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.960 kb on + strand, within thrA at 315.960 kb on + strand, within thrA at 316.061 kb on + strand, within thrA at 316.137 kb on + strand, within thrA at 316.137 kb on + strand, within thrA at 316.137 kb on + strand, within thrA at 316.137 kb on + strand, within thrA at 316.137 kb on + strand, within thrA at 316.137 kb on + strand, within thrA at 316.138 kb on - strand, within thrA at 316.138 kb on - strand, within thrA at 316.138 kb on - strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.139 kb on + strand, within thrA at 316.140 kb on - strand, within thrA at 316.140 kb on - strand, within thrA at 316.140 kb on - strand, within thrA at 316.140 kb on - strand, within thrA at 316.141 kb on + strand, within thrA at 316.142 kb on - strand, within thrA at 316.142 kb on - strand, within thrA at 316.142 kb on - strand, within thrA at 316.142 kb on - strand, within thrA at 316.234 kb on + strand, within thrA at 316.303 kb on - strand, within thrA at 316.303 kb on - strand, within thrA at 316.338 kb on + strand, within thrA at 316.347 kb on + strand, within thrA at 316.347 kb on + strand, within thrA at 316.347 kb on + strand, within thrA at 316.347 kb on + strand, within thrA at 316.358 kb on + strand, within thrA at 316.358 kb on + strand, within thrA at 316.358 kb on + strand, within thrA at 316.359 kb on - strand, within thrA at 316.423 kb on + strand, within thrA at 316.423 kb on + strand, within thrA at 316.424 kb on - strand, within thrA at 316.424 kb on - strand, within thrA at 316.424 kb on - strand, within thrA at 316.424 kb on - strand, within thrA at 316.438 kb on - strand, within thrA at 316.512 kb on + strand, within thrA at 316.512 kb on + strand, within thrA at 316.512 kb on + strand, within thrA at 316.512 kb on + strand, within thrA at 316.512 kb on + strand, within thrA at 316.513 kb on - strand, within thrA at 316.513 kb on - strand, within thrA at 316.513 kb on - strand, within thrA at 316.513 kb on - strand, within thrA at 316.534 kb on + strand, within thrA at 316.535 kb on - strand, within thrA at 316.648 kb on - strand at 316.654 kb on + strand at 316.812 kb on + strand at 316.813 kb on - strand at 316.843 kb on + strand at 316.844 kb on - strand at 316.844 kb on - strand at 316.844 kb on - strand at 316.851 kb on + strand at 316.852 kb on - strand at 316.912 kb on - strand at 316.932 kb on - strand, within thrL at 316.932 kb on - strand, within thrL at 316.941 kb on - strand, within thrL at 316.976 kb on + strand, within thrL at 316.989 kb on - strand, within thrL at 316.989 kb on - strand, within thrL at 317.011 kb on + strand at 317.012 kb on - strand at 317.019 kb on - strand at 317.019 kb on - strand at 317.041 kb on - strand at 317.046 kb on + strand at 317.046 kb on + strand at 317.160 kb on + strand at 317.160 kb on + strand at 317.160 kb on + strand at 317.160 kb on + strand at 317.160 kb on + strand at 317.160 kb on + strand at 317.161 kb on - strand at 317.161 kb on - strand at 317.200 kb on + strand at 317.200 kb on + strand at 317.201 kb on - strand at 317.203 kb on + strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.301 kb on + strand, within lasT at 317.302 kb on - strand, within lasT at 317.319 kb on + strand, within lasT at 317.319 kb on + strand, within lasT at 317.319 kb on + strand, within lasT at 317.319 kb on + strand, within lasT at 317.319 kb on + strand, within lasT at 317.424 kb on + strand, within lasT at 317.425 kb on - strand, within lasT at 317.428 kb on + strand, within lasT at 317.436 kb on + strand, within lasT at 317.437 kb on - strand, within lasT at 317.437 kb on - strand, within lasT at 317.449 kb on + strand, within lasT at 317.449 kb on + strand, within lasT at 317.449 kb on + strand, within lasT at 317.450 kb on - strand, within lasT at 317.511 kb on - strand, within lasT at 317.541 kb on - strand, within lasT at 317.633 kb on + strand, within lasT at 317.638 kb on + strand, within lasT at 317.638 kb on + strand, within lasT at 317.639 kb on - strand, within lasT at 317.641 kb on + strand, within lasT at 317.647 kb on + strand, within lasT at 317.648 kb on - strand, within lasT at 317.726 kb on + strand, within lasT at 317.885 kb on + strand at 317.894 kb on + strand at 317.895 kb on - strand at 317.895 kb on - strand at 317.900 kb on + strand at 317.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas06 remove 315,960 + thrA MCAODC_01625 0.64 -1.8 315,960 + thrA MCAODC_01625 0.64 +0.8 316,061 + thrA MCAODC_01625 0.68 -0.3 316,137 + thrA MCAODC_01625 0.72 +0.2 316,137 + thrA MCAODC_01625 0.72 +0.1 316,137 + thrA MCAODC_01625 0.72 -1.1 316,137 + thrA MCAODC_01625 0.72 +1.4 316,137 + thrA MCAODC_01625 0.72 -0.5 316,137 + thrA MCAODC_01625 0.72 -0.2 316,138 - thrA MCAODC_01625 0.72 +1.3 316,138 - thrA MCAODC_01625 0.72 -0.2 316,138 - thrA MCAODC_01625 0.72 -0.3 316,139 + thrA MCAODC_01625 0.72 -0.1 316,139 + thrA MCAODC_01625 0.72 -0.4 316,139 + thrA MCAODC_01625 0.72 -0.3 316,139 + thrA MCAODC_01625 0.72 -1.6 316,139 + thrA MCAODC_01625 0.72 +0.6 316,139 + thrA MCAODC_01625 0.72 +0.7 316,139 + thrA MCAODC_01625 0.72 -1.2 316,139 + thrA MCAODC_01625 0.72 -0.8 316,139 + thrA MCAODC_01625 0.72 -0.1 316,139 + thrA MCAODC_01625 0.72 +0.7 316,139 + thrA MCAODC_01625 0.72 +0.7 316,139 + thrA MCAODC_01625 0.72 -0.2 316,139 + thrA MCAODC_01625 0.72 -2.7 316,140 - thrA MCAODC_01625 0.72 -1.1 316,140 - thrA MCAODC_01625 0.72 -0.1 316,140 - thrA MCAODC_01625 0.72 +0.7 316,140 - thrA MCAODC_01625 0.72 -0.5 316,141 + thrA MCAODC_01625 0.72 -0.1 316,142 - thrA MCAODC_01625 0.72 -0.3 316,142 - thrA MCAODC_01625 0.72 +0.3 316,142 - thrA MCAODC_01625 0.72 +0.4 316,142 - thrA MCAODC_01625 0.72 -0.3 316,234 + thrA MCAODC_01625 0.76 +0.4 316,303 - thrA MCAODC_01625 0.78 -0.1 316,303 - thrA MCAODC_01625 0.78 -1.0 316,338 + thrA MCAODC_01625 0.80 -0.3 316,347 + thrA MCAODC_01625 0.80 -1.3 316,347 + thrA MCAODC_01625 0.80 +0.7 316,347 + thrA MCAODC_01625 0.80 -0.1 316,347 + thrA MCAODC_01625 0.80 +1.6 316,358 + thrA MCAODC_01625 0.81 +0.2 316,358 + thrA MCAODC_01625 0.81 +0.3 316,358 + thrA MCAODC_01625 0.81 +0.6 316,359 - thrA MCAODC_01625 0.81 -0.0 316,423 + thrA MCAODC_01625 0.83 -2.5 316,423 + thrA MCAODC_01625 0.83 -0.5 316,424 - thrA MCAODC_01625 0.83 +0.2 316,424 - thrA MCAODC_01625 0.83 +1.3 316,424 - thrA MCAODC_01625 0.83 -0.7 316,424 - thrA MCAODC_01625 0.83 -0.6 316,438 - thrA MCAODC_01625 0.84 -0.5 316,512 + thrA MCAODC_01625 0.87 +1.0 316,512 + thrA MCAODC_01625 0.87 +0.1 316,512 + thrA MCAODC_01625 0.87 +0.5 316,512 + thrA MCAODC_01625 0.87 -0.8 316,512 + thrA MCAODC_01625 0.87 -2.1 316,513 - thrA MCAODC_01625 0.87 -0.6 316,513 - thrA MCAODC_01625 0.87 +0.0 316,513 - thrA MCAODC_01625 0.87 +0.3 316,513 - thrA MCAODC_01625 0.87 -2.2 316,534 + thrA MCAODC_01625 0.88 -0.6 316,535 - thrA MCAODC_01625 0.88 -0.5 316,648 - +0.4 316,654 + +0.5 316,812 + +2.0 316,813 - +0.1 316,843 + -0.9 316,844 - -0.2 316,844 - +1.0 316,844 - +0.7 316,851 + -1.0 316,852 - -0.1 316,912 - -0.3 316,932 - thrL MCAODC_01630 0.18 -0.5 316,932 - thrL MCAODC_01630 0.18 -0.3 316,941 - thrL MCAODC_01630 0.29 -2.5 316,976 + thrL MCAODC_01630 0.70 -2.2 316,989 - thrL MCAODC_01630 0.86 -2.5 316,989 - thrL MCAODC_01630 0.86 -3.0 317,011 + -0.3 317,012 - -0.2 317,019 - +0.0 317,019 - +0.0 317,041 - -1.2 317,046 + -0.5 317,046 + -1.7 317,160 + -1.9 317,160 + -0.1 317,160 + -0.7 317,160 + -0.7 317,160 + +2.5 317,160 + +0.0 317,161 - +0.5 317,161 - -0.3 317,200 + +0.7 317,200 + -0.3 317,201 - -0.8 317,203 + -0.1 317,204 - -0.3 317,204 - +1.0 317,204 - +0.2 317,301 + lasT MCAODC_01635 0.13 -0.9 317,302 - lasT MCAODC_01635 0.13 +0.0 317,319 + lasT MCAODC_01635 0.15 -0.8 317,319 + lasT MCAODC_01635 0.15 +1.3 317,319 + lasT MCAODC_01635 0.15 -1.3 317,319 + lasT MCAODC_01635 0.15 -0.8 317,319 + lasT MCAODC_01635 0.15 +1.9 317,424 + lasT MCAODC_01635 0.31 +0.4 317,425 - lasT MCAODC_01635 0.31 +0.9 317,428 + lasT MCAODC_01635 0.31 -1.4 317,436 + lasT MCAODC_01635 0.32 -0.9 317,437 - lasT MCAODC_01635 0.32 -0.6 317,437 - lasT MCAODC_01635 0.32 +0.2 317,449 + lasT MCAODC_01635 0.34 -0.1 317,449 + lasT MCAODC_01635 0.34 +3.0 317,449 + lasT MCAODC_01635 0.34 +0.2 317,450 - lasT MCAODC_01635 0.34 -0.7 317,511 - lasT MCAODC_01635 0.43 -1.1 317,541 - lasT MCAODC_01635 0.48 +0.3 317,633 + lasT MCAODC_01635 0.61 +0.1 317,638 + lasT MCAODC_01635 0.62 -0.2 317,638 + lasT MCAODC_01635 0.62 -1.0 317,639 - lasT MCAODC_01635 0.62 +1.4 317,641 + lasT MCAODC_01635 0.62 +0.1 317,647 + lasT MCAODC_01635 0.63 +0.0 317,648 - lasT MCAODC_01635 0.63 +0.1 317,726 + lasT MCAODC_01635 0.75 -0.5 317,885 + +1.0 317,894 + -0.4 317,895 - -0.4 317,895 - -1.4 317,900 + -0.3 317,986 + -0.5
Or see this region's nucleotide sequence