Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21090 and ABIE41_RS21095 are separated by 173 nucleotides ABIE41_RS21095 and ABIE41_RS21100 are separated by 187 nucleotides ABIE41_RS21100 and ABIE41_RS21105 are separated by 117 nucleotides
ABIE41_RS21090: ABIE41_RS21090 - ornithine cyclodeaminase family protein, at 4,337,007 to 4,338,017
_RS21090
ABIE41_RS21095: ABIE41_RS21095 - hypothetical protein, at 4,338,191 to 4,338,442
_RS21095
ABIE41_RS21100: ABIE41_RS21100 - L,D-transpeptidase, at 4,338,630 to 4,339,208
_RS21100
ABIE41_RS21105: ABIE41_RS21105 - amidase, at 4,339,326 to 4,340,498
_RS21105
Position (kb) 4338
4339
4340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4337.761 kb on + strand, within ABIE41_RS21090 at 4337.761 kb on + strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.762 kb on - strand, within ABIE41_RS21090 at 4337.996 kb on + strand at 4337.996 kb on + strand at 4337.997 kb on - strand at 4337.998 kb on + strand at 4337.998 kb on + strand at 4337.999 kb on - strand at 4338.064 kb on - strand at 4338.064 kb on - strand at 4338.064 kb on - strand at 4338.119 kb on + strand at 4338.119 kb on + strand at 4338.120 kb on - strand at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.792 kb on + strand, within ABIE41_RS21100 at 4338.793 kb on - strand, within ABIE41_RS21100 at 4338.793 kb on - strand, within ABIE41_RS21100 at 4338.849 kb on + strand, within ABIE41_RS21100 at 4338.849 kb on + strand, within ABIE41_RS21100 at 4339.164 kb on + strand at 4339.164 kb on + strand at 4339.165 kb on - strand at 4339.675 kb on + strand, within ABIE41_RS21105 at 4339.676 kb on - strand, within ABIE41_RS21105 at 4339.755 kb on + strand, within ABIE41_RS21105 at 4339.756 kb on - strand, within ABIE41_RS21105 at 4339.756 kb on - strand, within ABIE41_RS21105 at 4340.168 kb on + strand, within ABIE41_RS21105 at 4340.168 kb on + strand, within ABIE41_RS21105 at 4340.169 kb on - strand, within ABIE41_RS21105
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 4,337,761 + ABIE41_RS21090 0.75 +0.2 4,337,761 + ABIE41_RS21090 0.75 +0.1 4,337,762 - ABIE41_RS21090 0.75 -2.2 4,337,762 - ABIE41_RS21090 0.75 -1.8 4,337,762 - ABIE41_RS21090 0.75 +1.3 4,337,762 - ABIE41_RS21090 0.75 +0.6 4,337,762 - ABIE41_RS21090 0.75 +0.2 4,337,762 - ABIE41_RS21090 0.75 +0.1 4,337,762 - ABIE41_RS21090 0.75 -1.1 4,337,996 + -0.8 4,337,996 + -0.9 4,337,997 - -0.8 4,337,998 + +0.5 4,337,998 + -0.6 4,337,999 - -1.9 4,338,064 - +0.9 4,338,064 - -1.3 4,338,064 - -1.0 4,338,119 + +0.5 4,338,119 + -0.4 4,338,120 - -2.3 4,338,374 + ABIE41_RS21095 0.73 +0.5 4,338,374 + ABIE41_RS21095 0.73 -0.5 4,338,374 + ABIE41_RS21095 0.73 -2.7 4,338,374 + ABIE41_RS21095 0.73 +1.0 4,338,374 + ABIE41_RS21095 0.73 +1.4 4,338,374 + ABIE41_RS21095 0.73 +1.1 4,338,375 - ABIE41_RS21095 0.73 -0.5 4,338,375 - ABIE41_RS21095 0.73 +0.1 4,338,375 - ABIE41_RS21095 0.73 +1.0 4,338,375 - ABIE41_RS21095 0.73 -3.3 4,338,375 - ABIE41_RS21095 0.73 +0.2 4,338,375 - ABIE41_RS21095 0.73 +0.7 4,338,792 + ABIE41_RS21100 0.28 +0.3 4,338,793 - ABIE41_RS21100 0.28 -1.9 4,338,793 - ABIE41_RS21100 0.28 +0.3 4,338,849 + ABIE41_RS21100 0.38 -1.1 4,338,849 + ABIE41_RS21100 0.38 +0.7 4,339,164 + -0.2 4,339,164 + -0.2 4,339,165 - -2.6 4,339,675 + ABIE41_RS21105 0.30 +1.3 4,339,676 - ABIE41_RS21105 0.30 +0.5 4,339,755 + ABIE41_RS21105 0.37 +0.4 4,339,756 - ABIE41_RS21105 0.37 -1.3 4,339,756 - ABIE41_RS21105 0.37 +1.9 4,340,168 + ABIE41_RS21105 0.72 -0.4 4,340,168 + ABIE41_RS21105 0.72 +0.1 4,340,169 - ABIE41_RS21105 0.72 -0.6
Or see this region's nucleotide sequence