Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20960

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20950 and ABIE41_RS20955 are separated by 109 nucleotidesABIE41_RS20955 and ABIE41_RS20960 are separated by 13 nucleotidesABIE41_RS20960 and ABIE41_RS20965 are separated by 6 nucleotides ABIE41_RS20950: ABIE41_RS20950 - tripartite tricarboxylate transporter substrate binding protein, at 4,311,000 to 4,311,962 _RS20950 ABIE41_RS20955: ABIE41_RS20955 - tripartite tricarboxylate transporter TctB family protein, at 4,312,072 to 4,312,551 _RS20955 ABIE41_RS20960: ABIE41_RS20960 - tripartite tricarboxylate transporter permease, at 4,312,565 to 4,314,064 _RS20960 ABIE41_RS20965: ABIE41_RS20965 - aldehyde reductase, at 4,314,071 to 4,315,117 _RS20965 Position (kb) 4312 4313 4314 4315Strain fitness (log2 ratio) -2 -1 0 1 2at 4311.960 kb on + strandat 4311.960 kb on + strandat 4311.961 kb on - strandat 4312.156 kb on + strand, within ABIE41_RS20955at 4312.156 kb on + strand, within ABIE41_RS20955at 4312.157 kb on - strand, within ABIE41_RS20955at 4312.157 kb on - strand, within ABIE41_RS20955at 4312.159 kb on + strand, within ABIE41_RS20955at 4312.160 kb on - strand, within ABIE41_RS20955at 4312.192 kb on + strand, within ABIE41_RS20955at 4312.192 kb on + strand, within ABIE41_RS20955at 4312.766 kb on + strand, within ABIE41_RS20960at 4312.766 kb on + strand, within ABIE41_RS20960at 4312.766 kb on + strand, within ABIE41_RS20960at 4312.767 kb on - strand, within ABIE41_RS20960at 4312.767 kb on - strand, within ABIE41_RS20960at 4312.767 kb on - strand, within ABIE41_RS20960at 4312.767 kb on - strand, within ABIE41_RS20960at 4312.767 kb on - strand, within ABIE41_RS20960at 4312.767 kb on - strand, within ABIE41_RS20960at 4312.769 kb on + strand, within ABIE41_RS20960at 4312.781 kb on + strand, within ABIE41_RS20960at 4312.781 kb on + strand, within ABIE41_RS20960at 4312.781 kb on + strand, within ABIE41_RS20960at 4312.781 kb on + strand, within ABIE41_RS20960at 4312.781 kb on + strand, within ABIE41_RS20960at 4312.781 kb on + strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4312.782 kb on - strand, within ABIE41_RS20960at 4313.101 kb on - strand, within ABIE41_RS20960at 4313.101 kb on - strand, within ABIE41_RS20960at 4313.101 kb on - strand, within ABIE41_RS20960at 4313.402 kb on + strand, within ABIE41_RS20960at 4313.402 kb on + strand, within ABIE41_RS20960at 4313.403 kb on - strand, within ABIE41_RS20960at 4313.582 kb on + strand, within ABIE41_RS20960at 4313.742 kb on - strand, within ABIE41_RS20960at 4313.742 kb on - strand, within ABIE41_RS20960at 4313.837 kb on + strand, within ABIE41_RS20960at 4313.852 kb on + strand, within ABIE41_RS20960at 4313.853 kb on - strand, within ABIE41_RS20960at 4314.643 kb on - strand, within ABIE41_RS20965at 4314.860 kb on + strand, within ABIE41_RS20965at 4314.860 kb on + strand, within ABIE41_RS20965at 4314.860 kb on + strand, within ABIE41_RS20965at 4314.860 kb on + strand, within ABIE41_RS20965at 4314.861 kb on - strand, within ABIE41_RS20965at 4314.861 kb on - strand, within ABIE41_RS20965at 4314.862 kb on + strand, within ABIE41_RS20965at 4314.863 kb on - strand, within ABIE41_RS20965at 4314.863 kb on - strand, within ABIE41_RS20965

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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4,311,960 + +0.3
4,311,960 + -0.6
4,311,961 - +0.2
4,312,156 + ABIE41_RS20955 0.17 -2.5
4,312,156 + ABIE41_RS20955 0.17 +2.5
4,312,157 - ABIE41_RS20955 0.18 -0.0
4,312,157 - ABIE41_RS20955 0.18 +1.6
4,312,159 + ABIE41_RS20955 0.18 +0.5
4,312,160 - ABIE41_RS20955 0.18 -0.4
4,312,192 + ABIE41_RS20955 0.25 +0.7
4,312,192 + ABIE41_RS20955 0.25 +1.8
4,312,766 + ABIE41_RS20960 0.13 +1.6
4,312,766 + ABIE41_RS20960 0.13 -0.4
4,312,766 + ABIE41_RS20960 0.13 +0.5
4,312,767 - ABIE41_RS20960 0.13 -0.1
4,312,767 - ABIE41_RS20960 0.13 +0.8
4,312,767 - ABIE41_RS20960 0.13 +0.8
4,312,767 - ABIE41_RS20960 0.13 -0.1
4,312,767 - ABIE41_RS20960 0.13 -1.0
4,312,767 - ABIE41_RS20960 0.13 -0.9
4,312,769 + ABIE41_RS20960 0.14 +0.5
4,312,781 + ABIE41_RS20960 0.14 +0.7
4,312,781 + ABIE41_RS20960 0.14 +0.1
4,312,781 + ABIE41_RS20960 0.14 -0.5
4,312,781 + ABIE41_RS20960 0.14 +0.6
4,312,781 + ABIE41_RS20960 0.14 +0.9
4,312,781 + ABIE41_RS20960 0.14 -0.0
4,312,782 - ABIE41_RS20960 0.14 -0.4
4,312,782 - ABIE41_RS20960 0.14 -0.2
4,312,782 - ABIE41_RS20960 0.14 -1.2
4,312,782 - ABIE41_RS20960 0.14 +0.8
4,312,782 - ABIE41_RS20960 0.14 +0.1
4,312,782 - ABIE41_RS20960 0.14 +0.3
4,312,782 - ABIE41_RS20960 0.14 +0.5
4,312,782 - ABIE41_RS20960 0.14 -0.3
4,313,101 - ABIE41_RS20960 0.36 -1.3
4,313,101 - ABIE41_RS20960 0.36 -0.8
4,313,101 - ABIE41_RS20960 0.36 +0.7
4,313,402 + ABIE41_RS20960 0.56 +0.6
4,313,402 + ABIE41_RS20960 0.56 +0.5
4,313,403 - ABIE41_RS20960 0.56 +1.3
4,313,582 + ABIE41_RS20960 0.68 -0.3
4,313,742 - ABIE41_RS20960 0.78 +0.9
4,313,742 - ABIE41_RS20960 0.78 -0.2
4,313,837 + ABIE41_RS20960 0.85 +0.1
4,313,852 + ABIE41_RS20960 0.86 +0.8
4,313,853 - ABIE41_RS20960 0.86 -0.2
4,314,643 - ABIE41_RS20965 0.55 +0.3
4,314,860 + ABIE41_RS20965 0.75 -0.5
4,314,860 + ABIE41_RS20965 0.75 +0.6
4,314,860 + ABIE41_RS20965 0.75 -0.5
4,314,860 + ABIE41_RS20965 0.75 +0.5
4,314,861 - ABIE41_RS20965 0.75 +0.4
4,314,861 - ABIE41_RS20965 0.75 -0.4
4,314,862 + ABIE41_RS20965 0.76 +0.5
4,314,863 - ABIE41_RS20965 0.76 +0.5
4,314,863 - ABIE41_RS20965 0.76 -0.3

Or see this region's nucleotide sequence