Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20945 and ABIE41_RS20950 are separated by 171 nucleotides ABIE41_RS20950 and ABIE41_RS20955 are separated by 109 nucleotides ABIE41_RS20955 and ABIE41_RS20960 are separated by 13 nucleotides
ABIE41_RS20945: ABIE41_RS20945 - O-antigen ligase family protein, at 4,309,560 to 4,310,828
_RS20945
ABIE41_RS20950: ABIE41_RS20950 - tripartite tricarboxylate transporter substrate binding protein, at 4,311,000 to 4,311,962
_RS20950
ABIE41_RS20955: ABIE41_RS20955 - tripartite tricarboxylate transporter TctB family protein, at 4,312,072 to 4,312,551
_RS20955
ABIE41_RS20960: ABIE41_RS20960 - tripartite tricarboxylate transporter permease, at 4,312,565 to 4,314,064
_RS20960
Position (kb) 4310
4311
4312 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4310.841 kb on - strand at 4310.997 kb on + strand at 4310.997 kb on + strand at 4310.997 kb on + strand at 4310.997 kb on + strand at 4310.997 kb on + strand at 4310.997 kb on + strand at 4310.997 kb on + strand at 4310.998 kb on - strand at 4310.998 kb on - strand at 4310.998 kb on - strand at 4310.998 kb on - strand at 4311.483 kb on - strand, within ABIE41_RS20950 at 4311.537 kb on + strand, within ABIE41_RS20950 at 4311.537 kb on + strand, within ABIE41_RS20950 at 4311.537 kb on + strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.538 kb on - strand, within ABIE41_RS20950 at 4311.960 kb on + strand at 4311.960 kb on + strand at 4311.961 kb on - strand at 4312.156 kb on + strand, within ABIE41_RS20955 at 4312.156 kb on + strand, within ABIE41_RS20955 at 4312.157 kb on - strand, within ABIE41_RS20955 at 4312.157 kb on - strand, within ABIE41_RS20955 at 4312.159 kb on + strand, within ABIE41_RS20955 at 4312.160 kb on - strand, within ABIE41_RS20955 at 4312.192 kb on + strand, within ABIE41_RS20955 at 4312.192 kb on + strand, within ABIE41_RS20955 at 4312.766 kb on + strand, within ABIE41_RS20960 at 4312.766 kb on + strand, within ABIE41_RS20960 at 4312.766 kb on + strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.767 kb on - strand, within ABIE41_RS20960 at 4312.769 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.781 kb on + strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960 at 4312.782 kb on - strand, within ABIE41_RS20960
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 4,310,841 - -0.8 4,310,997 + -0.1 4,310,997 + -0.2 4,310,997 + -0.4 4,310,997 + +1.0 4,310,997 + -0.7 4,310,997 + -0.2 4,310,997 + +0.3 4,310,998 - -2.3 4,310,998 - +0.2 4,310,998 - +0.2 4,310,998 - -1.4 4,311,483 - ABIE41_RS20950 0.50 +0.3 4,311,537 + ABIE41_RS20950 0.56 -0.8 4,311,537 + ABIE41_RS20950 0.56 -0.3 4,311,537 + ABIE41_RS20950 0.56 +0.2 4,311,538 - ABIE41_RS20950 0.56 +0.9 4,311,538 - ABIE41_RS20950 0.56 +0.3 4,311,538 - ABIE41_RS20950 0.56 +0.8 4,311,538 - ABIE41_RS20950 0.56 -1.0 4,311,538 - ABIE41_RS20950 0.56 +3.6 4,311,538 - ABIE41_RS20950 0.56 +0.4 4,311,538 - ABIE41_RS20950 0.56 +0.3 4,311,538 - ABIE41_RS20950 0.56 +0.3 4,311,538 - ABIE41_RS20950 0.56 +0.6 4,311,538 - ABIE41_RS20950 0.56 +0.1 4,311,538 - ABIE41_RS20950 0.56 -0.1 4,311,960 + +0.3 4,311,960 + -0.6 4,311,961 - +0.2 4,312,156 + ABIE41_RS20955 0.17 -2.5 4,312,156 + ABIE41_RS20955 0.17 +2.5 4,312,157 - ABIE41_RS20955 0.18 -0.0 4,312,157 - ABIE41_RS20955 0.18 +1.6 4,312,159 + ABIE41_RS20955 0.18 +0.5 4,312,160 - ABIE41_RS20955 0.18 -0.4 4,312,192 + ABIE41_RS20955 0.25 +0.7 4,312,192 + ABIE41_RS20955 0.25 +1.8 4,312,766 + ABIE41_RS20960 0.13 +1.6 4,312,766 + ABIE41_RS20960 0.13 -0.4 4,312,766 + ABIE41_RS20960 0.13 +0.5 4,312,767 - ABIE41_RS20960 0.13 -0.1 4,312,767 - ABIE41_RS20960 0.13 +0.8 4,312,767 - ABIE41_RS20960 0.13 +0.8 4,312,767 - ABIE41_RS20960 0.13 -0.1 4,312,767 - ABIE41_RS20960 0.13 -1.0 4,312,767 - ABIE41_RS20960 0.13 -0.9 4,312,769 + ABIE41_RS20960 0.14 +0.5 4,312,781 + ABIE41_RS20960 0.14 +0.7 4,312,781 + ABIE41_RS20960 0.14 +0.1 4,312,781 + ABIE41_RS20960 0.14 -0.5 4,312,781 + ABIE41_RS20960 0.14 +0.6 4,312,781 + ABIE41_RS20960 0.14 +0.9 4,312,781 + ABIE41_RS20960 0.14 -0.0 4,312,782 - ABIE41_RS20960 0.14 -0.4 4,312,782 - ABIE41_RS20960 0.14 -0.2 4,312,782 - ABIE41_RS20960 0.14 -1.2 4,312,782 - ABIE41_RS20960 0.14 +0.8 4,312,782 - ABIE41_RS20960 0.14 +0.1 4,312,782 - ABIE41_RS20960 0.14 +0.3 4,312,782 - ABIE41_RS20960 0.14 +0.5 4,312,782 - ABIE41_RS20960 0.14 -0.3
Or see this region's nucleotide sequence