Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20030 and ABIE41_RS20035 overlap by 4 nucleotides ABIE41_RS20035 and ABIE41_RS20040 are separated by 102 nucleotides ABIE41_RS20040 and ABIE41_RS20045 overlap by 1 nucleotides
ABIE41_RS20030: ABIE41_RS20030 - branched-chain amino acid ABC transporter permease, at 4,116,664 to 4,117,686
_RS20030
ABIE41_RS20035: ABIE41_RS20035 - ABC transporter ATP-binding protein, at 4,117,683 to 4,118,426
_RS20035
ABIE41_RS20040: ABIE41_RS20040 - ABC transporter ATP-binding protein, at 4,118,529 to 4,119,266
_RS20040
ABIE41_RS20045: ABIE41_RS20045 - Gfo/Idh/MocA family oxidoreductase, at 4,119,266 to 4,120,312
_RS20045
Position (kb) 4118
4119
4120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4117.892 kb on + strand, within ABIE41_RS20035 at 4117.892 kb on + strand, within ABIE41_RS20035 at 4117.893 kb on - strand, within ABIE41_RS20035 at 4117.893 kb on - strand, within ABIE41_RS20035 at 4117.893 kb on - strand, within ABIE41_RS20035 at 4118.128 kb on - strand, within ABIE41_RS20035 at 4118.128 kb on - strand, within ABIE41_RS20035 at 4118.413 kb on - strand at 4118.413 kb on - strand at 4118.413 kb on - strand at 4118.424 kb on + strand at 4118.424 kb on + strand at 4118.424 kb on + strand at 4118.572 kb on - strand at 4118.778 kb on + strand, within ABIE41_RS20040 at 4118.778 kb on + strand, within ABIE41_RS20040 at 4118.779 kb on - strand, within ABIE41_RS20040 at 4118.779 kb on - strand, within ABIE41_RS20040 at 4118.779 kb on - strand, within ABIE41_RS20040 at 4119.265 kb on - strand at 4119.265 kb on - strand at 4119.740 kb on + strand, within ABIE41_RS20045 at 4120.004 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.028 kb on + strand, within ABIE41_RS20045 at 4120.029 kb on - strand, within ABIE41_RS20045 at 4120.085 kb on + strand, within ABIE41_RS20045 at 4120.085 kb on + strand, within ABIE41_RS20045 at 4120.086 kb on - strand, within ABIE41_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 4,117,892 + ABIE41_RS20035 0.28 -0.7 4,117,892 + ABIE41_RS20035 0.28 -1.6 4,117,893 - ABIE41_RS20035 0.28 +0.8 4,117,893 - ABIE41_RS20035 0.28 +0.2 4,117,893 - ABIE41_RS20035 0.28 +0.4 4,118,128 - ABIE41_RS20035 0.60 +0.4 4,118,128 - ABIE41_RS20035 0.60 -1.8 4,118,413 - +0.5 4,118,413 - +0.2 4,118,413 - -0.8 4,118,424 + +2.1 4,118,424 + +0.7 4,118,424 + -0.8 4,118,572 - -1.7 4,118,778 + ABIE41_RS20040 0.34 +0.8 4,118,778 + ABIE41_RS20040 0.34 +0.1 4,118,779 - ABIE41_RS20040 0.34 -0.4 4,118,779 - ABIE41_RS20040 0.34 +1.4 4,118,779 - ABIE41_RS20040 0.34 -0.3 4,119,265 - +0.4 4,119,265 - +0.1 4,119,740 + ABIE41_RS20045 0.45 +3.2 4,120,004 + ABIE41_RS20045 0.70 -1.0 4,120,028 + ABIE41_RS20045 0.73 -2.9 4,120,028 + ABIE41_RS20045 0.73 +0.4 4,120,028 + ABIE41_RS20045 0.73 +0.0 4,120,028 + ABIE41_RS20045 0.73 +0.1 4,120,029 - ABIE41_RS20045 0.73 -2.9 4,120,085 + ABIE41_RS20045 0.78 +0.0 4,120,085 + ABIE41_RS20045 0.78 -0.0 4,120,086 - ABIE41_RS20045 0.78 -0.3
Or see this region's nucleotide sequence