Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18790

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
3,869,564	-		ABIE41_RS18785	0.45	+0.6
3,869,660	+		ABIE41_RS18785	0.50	+1.0
3,869,660	+		ABIE41_RS18785	0.50	-1.8
3,869,661	-		ABIE41_RS18785	0.50	-0.5
3,869,690	+		ABIE41_RS18785	0.52	+0.9
3,869,690	+		ABIE41_RS18785	0.52	-2.6
3,869,690	+		ABIE41_RS18785	0.52	-1.0
3,869,691	-		ABIE41_RS18785	0.52	-0.1
3,869,691	-		ABIE41_RS18785	0.52	+0.8
3,869,691	-		ABIE41_RS18785	0.52	-1.0
3,869,691	-		ABIE41_RS18785	0.52	+0.2
3,869,691	-		ABIE41_RS18785	0.52	+0.1
3,869,691	-		ABIE41_RS18785	0.52	-0.2
3,869,691	-		ABIE41_RS18785	0.52	-0.5
3,869,691	-		ABIE41_RS18785	0.52	-0.5
3,869,691	-		ABIE41_RS18785	0.52	-0.7
3,869,691	-		ABIE41_RS18785	0.52	+1.0
3,869,783	+		ABIE41_RS18785	0.57	-1.5
3,869,784	-		ABIE41_RS18785	0.57	+0.3
3,869,784	-		ABIE41_RS18785	0.57	-2.6
3,869,862	-		ABIE41_RS18785	0.62	-0.2
3,869,862	-		ABIE41_RS18785	0.62	+0.5
3,870,363	-		ABIE41_RS18785	0.90	-0.5
3,870,363	-		ABIE41_RS18785	0.90	-0.3
3,870,585	+				+2.0
3,870,585	+				+0.5
3,870,585	+				+0.0
3,870,586	-				-1.4
3,870,753	+		ABIE41_RS18790	0.20	-1.1
3,870,753	+		ABIE41_RS18790	0.20	-1.2
3,870,753	+		ABIE41_RS18790	0.20	+2.1
3,870,753	+		ABIE41_RS18790	0.20	+0.9
3,870,753	+		ABIE41_RS18790	0.20	+0.6
3,870,753	+		ABIE41_RS18790	0.20	-0.1
3,870,753	+		ABIE41_RS18790	0.20	-1.2
3,870,753	+		ABIE41_RS18790	0.20	-2.3
3,870,754	-		ABIE41_RS18790	0.20	-0.8
3,870,754	-		ABIE41_RS18790	0.20	+1.2
3,870,754	-		ABIE41_RS18790	0.20	-1.2
3,870,754	-		ABIE41_RS18790	0.20	-0.5
3,870,754	-		ABIE41_RS18790	0.20	-0.5
3,870,754	-		ABIE41_RS18790	0.20	+0.7
3,870,754	-		ABIE41_RS18790	0.20	-2.4
3,870,754	-		ABIE41_RS18790	0.20	-0.5
3,870,791	+		ABIE41_RS18790	0.23	+1.8
3,871,163	+		ABIE41_RS18790	0.59	+0.3
3,871,163	+		ABIE41_RS18790	0.59	+2.0
3,871,163	+		ABIE41_RS18790	0.59	-0.1
3,871,163	+		ABIE41_RS18790	0.59	-0.3
3,871,163	+		ABIE41_RS18790	0.59	-2.4
3,871,164	-		ABIE41_RS18790	0.59	-0.3
3,871,164	-		ABIE41_RS18790	0.59	+0.4
3,871,164	-		ABIE41_RS18790	0.59	-0.1
3,871,164	-		ABIE41_RS18790	0.59	-1.2
3,871,264	-		ABIE41_RS18790	0.69	+0.9
3,871,281	+		ABIE41_RS18790	0.70	+1.2
3,871,282	-		ABIE41_RS18790	0.70	+1.0
3,871,282	-		ABIE41_RS18790	0.70	+0.7
3,871,282	-		ABIE41_RS18790	0.70	+0.6
3,871,284	+		ABIE41_RS18790	0.71	+0.0
3,871,324	-		ABIE41_RS18790	0.75	-0.0
3,871,464	+		ABIE41_RS18790	0.88	+0.7
3,871,464	+		ABIE41_RS18790	0.88	-0.5
3,871,465	-		ABIE41_RS18790	0.88	-0.1
3,871,623	-				-0.5
3,871,666	+				+0.2
3,871,666	+				-0.3
3,871,666	+				-1.2
3,871,666	+				+0.1
3,871,666	+				-1.6
3,871,667	-				-0.1
3,871,667	-				+1.2
3,871,667	-				+0.4
3,871,667	-				-0.5
3,871,699	+		ABIE41_RS18795	0.12	-1.1
3,871,850	-		ABIE41_RS18795	0.29	-0.4
3,871,861	+		ABIE41_RS18795	0.30	-1.4
3,871,861	+		ABIE41_RS18795	0.30	-1.6
3,871,861	+		ABIE41_RS18795	0.30	-0.1
3,871,862	-		ABIE41_RS18795	0.30	-0.5
3,871,918	+		ABIE41_RS18795	0.37	+2.4
3,871,919	-		ABIE41_RS18795	0.37	-0.2
3,871,919	-		ABIE41_RS18795	0.37	-2.1
3,871,919	-		ABIE41_RS18795	0.37	+2.6
3,872,173	+		ABIE41_RS18795	0.65	+0.1
3,872,173	+		ABIE41_RS18795	0.65	-1.1
3,872,173	+		ABIE41_RS18795	0.65	+0.7
3,872,173	+		ABIE41_RS18795	0.65	-1.4
3,872,174	-		ABIE41_RS18795	0.66	-1.4
3,872,174	-		ABIE41_RS18795	0.66	+0.4
3,872,174	-		ABIE41_RS18795	0.66	+0.5
3,872,174	-		ABIE41_RS18795	0.66	-0.7
3,872,174	-		ABIE41_RS18795	0.66	+0.0
3,872,174	-		ABIE41_RS18795	0.66	-0.1
3,872,174	-		ABIE41_RS18795	0.66	-0.1
3,872,174	-		ABIE41_RS18795	0.66	-0.8