Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18070

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18065 and ABIE41_RS18070 are separated by 87 nucleotidesABIE41_RS18070 and ABIE41_RS18075 are separated by 190 nucleotides ABIE41_RS18065: ABIE41_RS18065 - trigger factor, at 3,722,380 to 3,723,822 _RS18065 ABIE41_RS18070: ABIE41_RS18070 - tRNA-Leu, at 3,723,910 to 3,723,994 _RS18070 ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621 _RS18075 Position (kb) 3723 3724Strain fitness (log2 ratio) -1 0 1 2 3 4at 3723.130 kb on - strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.131 kb on + strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.132 kb on - strand, within ABIE41_RS18065at 3723.650 kb on + strand, within ABIE41_RS18065at 3723.650 kb on + strand, within ABIE41_RS18065at 3723.651 kb on - strand, within ABIE41_RS18065at 3723.848 kb on + strandat 3723.848 kb on + strandat 3723.848 kb on + strandat 3723.849 kb on - strandat 3724.020 kb on - strandat 3724.057 kb on - strandat 3724.057 kb on - strandat 3724.057 kb on - strandat 3724.172 kb on + strandat 3724.172 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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3,723,130 - ABIE41_RS18065 0.52 -0.7
3,723,131 + ABIE41_RS18065 0.52 +3.9
3,723,131 + ABIE41_RS18065 0.52 +1.4
3,723,131 + ABIE41_RS18065 0.52 +1.2
3,723,131 + ABIE41_RS18065 0.52 +0.7
3,723,132 - ABIE41_RS18065 0.52 +1.2
3,723,132 - ABIE41_RS18065 0.52 -0.2
3,723,132 - ABIE41_RS18065 0.52 -1.2
3,723,132 - ABIE41_RS18065 0.52 -0.8
3,723,132 - ABIE41_RS18065 0.52 +0.2
3,723,650 + ABIE41_RS18065 0.88 +0.2
3,723,650 + ABIE41_RS18065 0.88 -0.6
3,723,651 - ABIE41_RS18065 0.88 -1.5
3,723,848 + +0.9
3,723,848 + -0.2
3,723,848 + +0.4
3,723,849 - -0.3
3,724,020 - +0.0
3,724,057 - -0.2
3,724,057 - -0.5
3,724,057 - -0.1
3,724,172 + +0.0
3,724,172 + +0.0

Or see this region's nucleotide sequence