Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12465

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,550,943	+				-0.7
2,550,943	+				+2.5
2,551,159	+		ABIE41_RS12460	0.25	+0.0
2,551,159	+		ABIE41_RS12460	0.25	-0.4
2,551,159	+		ABIE41_RS12460	0.25	-2.1
2,551,159	+		ABIE41_RS12460	0.25	+0.1
2,551,159	+		ABIE41_RS12460	0.25	-1.7
2,551,159	+		ABIE41_RS12460	0.25	-0.5
2,551,160	-		ABIE41_RS12460	0.25	-0.0
2,551,160	-		ABIE41_RS12460	0.25	+0.1
2,551,783	-				-2.2
2,551,783	-				+0.1
2,551,857	-				+0.5
2,552,089	+		ABIE41_RS12465	0.12	-0.3
2,552,089	+		ABIE41_RS12465	0.12	-0.2
2,552,089	+		ABIE41_RS12465	0.12	+0.6
2,552,089	+		ABIE41_RS12465	0.12	+0.7
2,552,090	-		ABIE41_RS12465	0.12	-0.1
2,552,090	-		ABIE41_RS12465	0.12	+0.3
2,552,542	+		ABIE41_RS12465	0.44	-0.5
2,552,542	+		ABIE41_RS12465	0.44	+0.3
2,552,542	+		ABIE41_RS12465	0.44	+0.2
2,552,542	+		ABIE41_RS12465	0.44	+1.8
2,552,542	+		ABIE41_RS12465	0.44	+0.4
2,552,542	+		ABIE41_RS12465	0.44	+1.8
2,552,542	+		ABIE41_RS12465	0.44	+0.1
2,552,543	-		ABIE41_RS12465	0.44	-3.2
2,552,543	-		ABIE41_RS12465	0.44	+0.0
2,552,543	-		ABIE41_RS12465	0.44	-1.2
2,552,543	-		ABIE41_RS12465	0.44	+0.1
2,552,543	-		ABIE41_RS12465	0.44	+0.0
2,552,665	+		ABIE41_RS12465	0.53	-0.1
2,552,666	-		ABIE41_RS12465	0.53	+0.2
2,552,666	-		ABIE41_RS12465	0.53	+0.6
2,552,666	-		ABIE41_RS12465	0.53	-0.6
2,552,666	-		ABIE41_RS12465	0.53	-0.2
2,552,778	+		ABIE41_RS12465	0.61	+0.2
2,552,778	+		ABIE41_RS12465	0.61	-0.6
2,552,778	+		ABIE41_RS12465	0.61	+0.7
2,552,778	+		ABIE41_RS12465	0.61	-0.1
2,552,780	-		ABIE41_RS12465	0.61	-0.2
2,552,896	+		ABIE41_RS12465	0.69	+0.3
2,552,896	+		ABIE41_RS12465	0.69	+0.1
2,553,221	-				+0.6
2,553,396	-				+0.1
2,553,798	-		ABIE41_RS12470	0.36	-1.0
2,554,069	-		ABIE41_RS12470	0.63	+0.4
2,554,070	+		ABIE41_RS12470	0.63	+0.1
2,554,070	+		ABIE41_RS12470	0.63	+0.1
2,554,070	+		ABIE41_RS12470	0.63	-0.5
2,554,070	+		ABIE41_RS12470	0.63	+0.8
2,554,070	+		ABIE41_RS12470	0.63	-0.1
2,554,070	+		ABIE41_RS12470	0.63	-1.0
2,554,071	-		ABIE41_RS12470	0.63	+1.3
2,554,071	-		ABIE41_RS12470	0.63	-1.9
2,554,071	-		ABIE41_RS12470	0.63	-1.4
2,554,073	-		ABIE41_RS12470	0.63	-0.5