Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12325

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,520,653	+		ABIE41_RS12315	0.82	+0.6
2,520,653	+		ABIE41_RS12315	0.82	+0.1
2,520,653	+		ABIE41_RS12315	0.82	-1.0
2,520,654	-		ABIE41_RS12315	0.82	-0.6
2,520,654	-		ABIE41_RS12315	0.82	-0.5
2,520,660	+		ABIE41_RS12315	0.83	-2.5
2,520,669	-		ABIE41_RS12315	0.86	-1.6
2,520,669	-		ABIE41_RS12315	0.86	-1.2
2,520,832	+				+0.7
2,520,832	+				+1.8
2,520,833	-				-0.2
2,520,834	+				+1.0
2,520,834	+				+0.8
2,520,834	+				+0.6
2,520,835	-				+0.6
2,521,249	+		ABIE41_RS12320	0.62	+0.5
2,521,249	+		ABIE41_RS12320	0.62	-2.4
2,521,249	+		ABIE41_RS12320	0.62	-2.2
2,521,250	-		ABIE41_RS12320	0.62	+0.2
2,521,300	+		ABIE41_RS12320	0.71	+0.2
2,521,300	+		ABIE41_RS12320	0.71	-0.1
2,521,300	+		ABIE41_RS12320	0.71	-2.2
2,521,301	-		ABIE41_RS12320	0.71	+0.4
2,521,301	-		ABIE41_RS12320	0.71	-0.5
2,521,301	-		ABIE41_RS12320	0.71	+1.8
2,521,301	-		ABIE41_RS12320	0.71	-2.6
2,521,358	-		ABIE41_RS12320	0.81	-1.2
2,521,358	-		ABIE41_RS12320	0.81	-0.6
2,521,358	-		ABIE41_RS12320	0.81	-1.8
2,521,358	-		ABIE41_RS12320	0.81	-0.8
2,521,358	-		ABIE41_RS12320	0.81	-1.3
2,521,700	+		ABIE41_RS12325	0.14	-0.2
2,521,739	+		ABIE41_RS12325	0.18	-0.5
2,521,739	+		ABIE41_RS12325	0.18	+0.4
2,521,740	-		ABIE41_RS12325	0.18	+0.1
2,521,740	-		ABIE41_RS12325	0.18	-0.6
2,521,740	-		ABIE41_RS12325	0.18	+0.2
2,521,740	-		ABIE41_RS12325	0.18	-2.2
2,522,003	+		ABIE41_RS12325	0.47	+0.1
2,522,234	+		ABIE41_RS12325	0.72	-1.0
2,522,346	+		ABIE41_RS12325	0.84	+0.9
2,522,347	-		ABIE41_RS12325	0.84	+2.2
2,522,347	-		ABIE41_RS12325	0.84	-0.0
2,522,533	+				+1.8
2,522,550	+				+0.1
2,522,551	-				-0.1
2,523,036	+		ABIE41_RS12330	0.83	-0.1
2,523,036	+		ABIE41_RS12330	0.83	-0.0
2,523,037	-		ABIE41_RS12330	0.83	+0.7
2,523,037	-		ABIE41_RS12330	0.83	-0.2
2,523,037	-		ABIE41_RS12330	0.83	+0.9
2,523,037	-		ABIE41_RS12330	0.83	-1.3
2,523,037	-		ABIE41_RS12330	0.83	+1.0
2,523,037	-		ABIE41_RS12330	0.83	+0.4
2,523,037	-		ABIE41_RS12330	0.83	-1.0
2,523,069	+		ABIE41_RS12330	0.88	+0.3
2,523,070	-		ABIE41_RS12330	0.88	-0.3
2,523,111	+				-0.1
2,523,111	+				+0.8
2,523,111	+				+0.0
2,523,111	+				-0.5
2,523,112	-				+0.4
2,523,112	-				-0.5
2,523,152	-				-0.1
2,523,238	+				-0.4
2,523,239	-				+1.8
2,523,372	-		ABIE41_RS12335	0.23	+2.5
2,523,372	-		ABIE41_RS12335	0.23	+0.2
2,523,373	+		ABIE41_RS12335	0.23	+0.3
2,523,373	+		ABIE41_RS12335	0.23	-0.6
2,523,373	+		ABIE41_RS12335	0.23	-1.3
2,523,373	+		ABIE41_RS12335	0.23	+0.4
2,523,373	+		ABIE41_RS12335	0.23	-1.6
2,523,373	+		ABIE41_RS12335	0.23	+0.8
2,523,373	+		ABIE41_RS12335	0.23	+0.6
2,523,374	-		ABIE41_RS12335	0.23	-0.5
2,523,374	-		ABIE41_RS12335	0.23	+0.3
2,523,374	-		ABIE41_RS12335	0.23	+0.3
2,523,374	-		ABIE41_RS12335	0.23	+0.2
2,523,391	+		ABIE41_RS12335	0.24	+0.7