Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08020

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08010 and ABIE41_RS08015 are separated by 109 nucleotidesABIE41_RS08015 and ABIE41_RS08020 are separated by 8 nucleotidesABIE41_RS08020 and ABIE41_RS08025 are separated by 94 nucleotidesABIE41_RS08025 and ABIE41_RS08030 are separated by 61 nucleotidesABIE41_RS08030 and ABIE41_RS08035 are separated by 76 nucleotides ABIE41_RS08010: ABIE41_RS08010 - protein meaA, at 1,646,212 to 1,648,203 _RS08010 ABIE41_RS08015: ABIE41_RS08015 - aldose 1-epimerase family protein, at 1,648,313 to 1,649,188 _RS08015 ABIE41_RS08020: ABIE41_RS08020 - OmpA family protein, at 1,649,197 to 1,650,276 _RS08020 ABIE41_RS08025: ABIE41_RS08025 - DUF1178 family protein, at 1,650,371 to 1,650,859 _RS08025 ABIE41_RS08030: ABIE41_RS08030 - glutaredoxin 3, at 1,650,921 to 1,651,178 _RS08030 ABIE41_RS08035: ABIE41_RS08035 - ComF family protein, at 1,651,255 to 1,652,016 _RS08035 Position (kb) 1649 1650 1651Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1648.255 kb on + strandat 1648.255 kb on + strandat 1648.514 kb on + strand, within ABIE41_RS08015at 1648.515 kb on - strand, within ABIE41_RS08015at 1648.546 kb on - strand, within ABIE41_RS08015at 1648.546 kb on - strand, within ABIE41_RS08015at 1648.851 kb on + strand, within ABIE41_RS08015at 1648.851 kb on + strand, within ABIE41_RS08015at 1648.851 kb on + strand, within ABIE41_RS08015at 1648.852 kb on - strand, within ABIE41_RS08015at 1648.852 kb on - strand, within ABIE41_RS08015at 1648.852 kb on - strand, within ABIE41_RS08015at 1648.852 kb on - strand, within ABIE41_RS08015at 1648.852 kb on - strand, within ABIE41_RS08015at 1649.378 kb on + strand, within ABIE41_RS08020at 1649.522 kb on + strand, within ABIE41_RS08020at 1649.522 kb on + strand, within ABIE41_RS08020at 1649.523 kb on - strand, within ABIE41_RS08020at 1649.523 kb on - strand, within ABIE41_RS08020at 1649.523 kb on - strand, within ABIE41_RS08020at 1649.553 kb on + strand, within ABIE41_RS08020at 1649.553 kb on + strand, within ABIE41_RS08020at 1649.554 kb on - strand, within ABIE41_RS08020at 1649.554 kb on - strand, within ABIE41_RS08020at 1649.617 kb on - strand, within ABIE41_RS08020at 1649.657 kb on + strand, within ABIE41_RS08020at 1649.678 kb on + strand, within ABIE41_RS08020at 1649.678 kb on + strand, within ABIE41_RS08020at 1649.678 kb on + strand, within ABIE41_RS08020at 1649.678 kb on + strand, within ABIE41_RS08020at 1649.678 kb on + strand, within ABIE41_RS08020at 1649.678 kb on + strand, within ABIE41_RS08020at 1649.679 kb on - strand, within ABIE41_RS08020at 1649.679 kb on - strand, within ABIE41_RS08020at 1649.679 kb on - strand, within ABIE41_RS08020at 1649.819 kb on + strand, within ABIE41_RS08020at 1649.819 kb on + strand, within ABIE41_RS08020at 1649.819 kb on + strand, within ABIE41_RS08020at 1649.819 kb on + strand, within ABIE41_RS08020at 1649.820 kb on - strand, within ABIE41_RS08020at 1649.820 kb on - strand, within ABIE41_RS08020at 1649.820 kb on - strand, within ABIE41_RS08020at 1649.820 kb on - strand, within ABIE41_RS08020at 1649.820 kb on - strand, within ABIE41_RS08020at 1649.820 kb on - strand, within ABIE41_RS08020at 1649.835 kb on + strand, within ABIE41_RS08020at 1649.835 kb on + strand, within ABIE41_RS08020at 1649.836 kb on - strand, within ABIE41_RS08020at 1649.836 kb on - strand, within ABIE41_RS08020at 1649.939 kb on + strand, within ABIE41_RS08020at 1649.940 kb on - strand, within ABIE41_RS08020at 1649.940 kb on - strand, within ABIE41_RS08020at 1649.984 kb on + strand, within ABIE41_RS08020at 1649.984 kb on + strand, within ABIE41_RS08020at 1649.985 kb on - strand, within ABIE41_RS08020at 1649.985 kb on - strand, within ABIE41_RS08020at 1650.031 kb on + strand, within ABIE41_RS08020at 1650.032 kb on - strand, within ABIE41_RS08020at 1650.131 kb on + strand, within ABIE41_RS08020at 1650.132 kb on - strand, within ABIE41_RS08020at 1650.132 kb on - strand, within ABIE41_RS08020at 1650.132 kb on - strand, within ABIE41_RS08020at 1650.132 kb on - strand, within ABIE41_RS08020at 1650.132 kb on - strand, within ABIE41_RS08020at 1650.155 kb on + strand, within ABIE41_RS08020at 1650.156 kb on - strand, within ABIE41_RS08020at 1650.175 kb on - strandat 1650.462 kb on + strand, within ABIE41_RS08025at 1650.462 kb on + strand, within ABIE41_RS08025at 1650.462 kb on + strand, within ABIE41_RS08025at 1650.462 kb on + strand, within ABIE41_RS08025at 1650.462 kb on + strand, within ABIE41_RS08025at 1650.462 kb on + strand, within ABIE41_RS08025at 1650.462 kb on + strand, within ABIE41_RS08025at 1650.463 kb on - strand, within ABIE41_RS08025at 1650.463 kb on - strand, within ABIE41_RS08025at 1650.463 kb on - strand, within ABIE41_RS08025at 1650.463 kb on - strand, within ABIE41_RS08025at 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.849 kb on + strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1650.850 kb on - strandat 1651.139 kb on - strand, within ABIE41_RS08030at 1651.159 kb on + strandat 1651.159 kb on + strandat 1651.159 kb on + strandat 1651.159 kb on + strandat 1651.159 kb on + strandat 1651.159 kb on + strandat 1651.160 kb on - strandat 1651.160 kb on - strandat 1651.160 kb on - strandat 1651.160 kb on - strandat 1651.214 kb on + strandat 1651.214 kb on + strandat 1651.214 kb on + strandat 1651.214 kb on + strandat 1651.214 kb on + strandat 1651.215 kb on - strandat 1651.215 kb on - strandat 1651.215 kb on - strandat 1651.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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1,648,255 + +1.2
1,648,255 + -0.2
1,648,514 + ABIE41_RS08015 0.23 -2.2
1,648,515 - ABIE41_RS08015 0.23 -0.2
1,648,546 - ABIE41_RS08015 0.27 -0.7
1,648,546 - ABIE41_RS08015 0.27 +0.5
1,648,851 + ABIE41_RS08015 0.61 -1.0
1,648,851 + ABIE41_RS08015 0.61 -0.3
1,648,851 + ABIE41_RS08015 0.61 +0.2
1,648,852 - ABIE41_RS08015 0.62 +0.1
1,648,852 - ABIE41_RS08015 0.62 +0.5
1,648,852 - ABIE41_RS08015 0.62 +0.3
1,648,852 - ABIE41_RS08015 0.62 +1.7
1,648,852 - ABIE41_RS08015 0.62 -0.3
1,649,378 + ABIE41_RS08020 0.17 -1.1
1,649,522 + ABIE41_RS08020 0.30 -0.5
1,649,522 + ABIE41_RS08020 0.30 +1.2
1,649,523 - ABIE41_RS08020 0.30 -0.6
1,649,523 - ABIE41_RS08020 0.30 +1.2
1,649,523 - ABIE41_RS08020 0.30 -1.8
1,649,553 + ABIE41_RS08020 0.33 -0.2
1,649,553 + ABIE41_RS08020 0.33 -0.1
1,649,554 - ABIE41_RS08020 0.33 +0.4
1,649,554 - ABIE41_RS08020 0.33 +1.0
1,649,617 - ABIE41_RS08020 0.39 +0.1
1,649,657 + ABIE41_RS08020 0.43 +0.0
1,649,678 + ABIE41_RS08020 0.45 -0.8
1,649,678 + ABIE41_RS08020 0.45 -0.6
1,649,678 + ABIE41_RS08020 0.45 +1.0
1,649,678 + ABIE41_RS08020 0.45 -1.1
1,649,678 + ABIE41_RS08020 0.45 -0.3
1,649,678 + ABIE41_RS08020 0.45 -0.5
1,649,679 - ABIE41_RS08020 0.45 -0.3
1,649,679 - ABIE41_RS08020 0.45 +1.1
1,649,679 - ABIE41_RS08020 0.45 -0.6
1,649,819 + ABIE41_RS08020 0.58 -2.8
1,649,819 + ABIE41_RS08020 0.58 -0.0
1,649,819 + ABIE41_RS08020 0.58 +0.5
1,649,819 + ABIE41_RS08020 0.58 +0.3
1,649,820 - ABIE41_RS08020 0.58 -0.5
1,649,820 - ABIE41_RS08020 0.58 -0.3
1,649,820 - ABIE41_RS08020 0.58 -0.3
1,649,820 - ABIE41_RS08020 0.58 +0.1
1,649,820 - ABIE41_RS08020 0.58 +0.1
1,649,820 - ABIE41_RS08020 0.58 -0.0
1,649,835 + ABIE41_RS08020 0.59 +0.0
1,649,835 + ABIE41_RS08020 0.59 +0.6
1,649,836 - ABIE41_RS08020 0.59 +0.5
1,649,836 - ABIE41_RS08020 0.59 +0.7
1,649,939 + ABIE41_RS08020 0.69 +0.1
1,649,940 - ABIE41_RS08020 0.69 -0.2
1,649,940 - ABIE41_RS08020 0.69 +0.5
1,649,984 + ABIE41_RS08020 0.73 +0.7
1,649,984 + ABIE41_RS08020 0.73 -0.4
1,649,985 - ABIE41_RS08020 0.73 -0.0
1,649,985 - ABIE41_RS08020 0.73 +0.6
1,650,031 + ABIE41_RS08020 0.77 +0.3
1,650,032 - ABIE41_RS08020 0.77 +0.6
1,650,131 + ABIE41_RS08020 0.86 -1.0
1,650,132 - ABIE41_RS08020 0.87 -0.1
1,650,132 - ABIE41_RS08020 0.87 -0.5
1,650,132 - ABIE41_RS08020 0.87 +1.7
1,650,132 - ABIE41_RS08020 0.87 +0.3
1,650,132 - ABIE41_RS08020 0.87 +1.4
1,650,155 + ABIE41_RS08020 0.89 +0.4
1,650,156 - ABIE41_RS08020 0.89 -0.1
1,650,175 - -0.8
1,650,462 + ABIE41_RS08025 0.19 -0.4
1,650,462 + ABIE41_RS08025 0.19 -0.0
1,650,462 + ABIE41_RS08025 0.19 +1.5
1,650,462 + ABIE41_RS08025 0.19 +0.4
1,650,462 + ABIE41_RS08025 0.19 -0.0
1,650,462 + ABIE41_RS08025 0.19 -0.2
1,650,462 + ABIE41_RS08025 0.19 -1.4
1,650,463 - ABIE41_RS08025 0.19 +0.1
1,650,463 - ABIE41_RS08025 0.19 -1.5
1,650,463 - ABIE41_RS08025 0.19 -0.1
1,650,463 - ABIE41_RS08025 0.19 -2.2
1,650,849 + -0.2
1,650,849 + -0.2
1,650,849 + +0.5
1,650,849 + +0.0
1,650,849 + +0.3
1,650,849 + -0.5
1,650,849 + -0.4
1,650,849 + -0.1
1,650,850 - +0.2
1,650,850 - -0.2
1,650,850 - +1.0
1,650,850 - +0.9
1,650,850 - -0.5
1,650,850 - +0.1
1,650,850 - -0.6
1,650,850 - +0.1
1,650,850 - -0.4
1,651,139 - ABIE41_RS08030 0.84 +1.7
1,651,159 + +0.2
1,651,159 + +1.1
1,651,159 + -0.1
1,651,159 + +0.5
1,651,159 + -2.0
1,651,159 + -0.1
1,651,160 - +0.0
1,651,160 - -2.1
1,651,160 - -2.1
1,651,160 - -1.5
1,651,214 + -1.0
1,651,214 + -1.4
1,651,214 + +1.9
1,651,214 + -1.5
1,651,214 + -0.4
1,651,215 - +0.9
1,651,215 - -0.1
1,651,215 - +0.2
1,651,215 - -0.4

Or see this region's nucleotide sequence