Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08000

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07995 and ABIE41_RS08000 overlap by 29 nucleotidesABIE41_RS08000 and ABIE41_RS08005 are separated by 153 nucleotidesABIE41_RS08005 and ABIE41_RS08010 are separated by 14 nucleotides ABIE41_RS07995: ABIE41_RS07995 - GNAT family N-acetyltransferase, at 1,643,134 to 1,644,300 _RS07995 ABIE41_RS08000: ABIE41_RS08000 - AMP-binding protein, at 1,644,272 to 1,645,888 _RS08000 ABIE41_RS08005: ABIE41_RS08005 - hypothetical protein, at 1,646,042 to 1,646,197 _RS08005 ABIE41_RS08010: ABIE41_RS08010 - protein meaA, at 1,646,212 to 1,648,203 _RS08010 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1644.016 kb on + strand, within ABIE41_RS07995at 1644.016 kb on + strand, within ABIE41_RS07995at 1644.016 kb on + strand, within ABIE41_RS07995at 1644.016 kb on + strand, within ABIE41_RS07995at 1644.017 kb on - strand, within ABIE41_RS07995at 1644.017 kb on - strand, within ABIE41_RS07995at 1644.017 kb on - strand, within ABIE41_RS07995at 1644.017 kb on - strand, within ABIE41_RS07995at 1644.357 kb on + strandat 1644.606 kb on + strand, within ABIE41_RS08000at 1644.606 kb on + strand, within ABIE41_RS08000at 1644.606 kb on + strand, within ABIE41_RS08000at 1644.606 kb on + strand, within ABIE41_RS08000at 1644.606 kb on + strand, within ABIE41_RS08000at 1644.607 kb on - strand, within ABIE41_RS08000at 1644.607 kb on - strand, within ABIE41_RS08000at 1644.882 kb on + strand, within ABIE41_RS08000at 1644.882 kb on + strand, within ABIE41_RS08000at 1644.882 kb on + strand, within ABIE41_RS08000at 1644.883 kb on - strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.314 kb on + strand, within ABIE41_RS08000at 1645.315 kb on - strand, within ABIE41_RS08000at 1645.315 kb on - strand, within ABIE41_RS08000at 1645.315 kb on - strand, within ABIE41_RS08000at 1645.315 kb on - strand, within ABIE41_RS08000at 1645.315 kb on - strand, within ABIE41_RS08000at 1645.474 kb on + strand, within ABIE41_RS08000at 1645.822 kb on - strandat 1645.921 kb on - strandat 1646.283 kb on + strandat 1646.283 kb on + strandat 1646.283 kb on + strandat 1646.283 kb on + strandat 1646.285 kb on + strandat 1646.285 kb on + strandat 1646.285 kb on + strandat 1646.285 kb on + strandat 1646.285 kb on + strandat 1646.286 kb on - strandat 1646.426 kb on - strand, within ABIE41_RS08010at 1646.445 kb on + strand, within ABIE41_RS08010at 1646.507 kb on + strand, within ABIE41_RS08010at 1646.507 kb on + strand, within ABIE41_RS08010at 1646.507 kb on + strand, within ABIE41_RS08010at 1646.507 kb on + strand, within ABIE41_RS08010at 1646.508 kb on - strand, within ABIE41_RS08010at 1646.508 kb on - strand, within ABIE41_RS08010at 1646.508 kb on - strand, within ABIE41_RS08010

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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1,644,016 + ABIE41_RS07995 0.76 -0.4
1,644,016 + ABIE41_RS07995 0.76 -0.2
1,644,016 + ABIE41_RS07995 0.76 -0.3
1,644,016 + ABIE41_RS07995 0.76 +0.1
1,644,017 - ABIE41_RS07995 0.76 -0.5
1,644,017 - ABIE41_RS07995 0.76 -3.0
1,644,017 - ABIE41_RS07995 0.76 -0.4
1,644,017 - ABIE41_RS07995 0.76 -0.8
1,644,357 + -0.0
1,644,606 + ABIE41_RS08000 0.21 -0.8
1,644,606 + ABIE41_RS08000 0.21 +0.0
1,644,606 + ABIE41_RS08000 0.21 +2.6
1,644,606 + ABIE41_RS08000 0.21 +0.2
1,644,606 + ABIE41_RS08000 0.21 +0.3
1,644,607 - ABIE41_RS08000 0.21 +1.3
1,644,607 - ABIE41_RS08000 0.21 -0.3
1,644,882 + ABIE41_RS08000 0.38 +0.4
1,644,882 + ABIE41_RS08000 0.38 +1.5
1,644,882 + ABIE41_RS08000 0.38 -0.1
1,644,883 - ABIE41_RS08000 0.38 +1.3
1,645,314 + ABIE41_RS08000 0.64 -1.9
1,645,314 + ABIE41_RS08000 0.64 +0.9
1,645,314 + ABIE41_RS08000 0.64 +0.6
1,645,314 + ABIE41_RS08000 0.64 -0.2
1,645,314 + ABIE41_RS08000 0.64 +0.2
1,645,314 + ABIE41_RS08000 0.64 +0.2
1,645,314 + ABIE41_RS08000 0.64 -0.7
1,645,314 + ABIE41_RS08000 0.64 +1.2
1,645,315 - ABIE41_RS08000 0.65 +2.1
1,645,315 - ABIE41_RS08000 0.65 +0.0
1,645,315 - ABIE41_RS08000 0.65 +1.1
1,645,315 - ABIE41_RS08000 0.65 +0.4
1,645,315 - ABIE41_RS08000 0.65 -0.1
1,645,474 + ABIE41_RS08000 0.74 -0.5
1,645,822 - +0.1
1,645,921 - -0.4
1,646,283 + -0.2
1,646,283 + -1.6
1,646,283 + -1.1
1,646,283 + +0.6
1,646,285 + -0.5
1,646,285 + +0.3
1,646,285 + -0.9
1,646,285 + +0.2
1,646,285 + -0.2
1,646,286 - -0.5
1,646,426 - ABIE41_RS08010 0.11 -1.2
1,646,445 + ABIE41_RS08010 0.12 -0.1
1,646,507 + ABIE41_RS08010 0.15 -0.8
1,646,507 + ABIE41_RS08010 0.15 -2.5
1,646,507 + ABIE41_RS08010 0.15 +0.1
1,646,507 + ABIE41_RS08010 0.15 +1.2
1,646,508 - ABIE41_RS08010 0.15 -1.2
1,646,508 - ABIE41_RS08010 0.15 +0.1
1,646,508 - ABIE41_RS08010 0.15 +0.1

Or see this region's nucleotide sequence