Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07935

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07930 and ABIE41_RS07935 are separated by 146 nucleotidesABIE41_RS07935 and ABIE41_RS07940 overlap by 4 nucleotidesABIE41_RS07940 and ABIE41_RS07945 are separated by 27 nucleotides ABIE41_RS07930: ABIE41_RS07930 - ABC transporter substrate-binding protein, at 1,631,175 to 1,632,236 _RS07930 ABIE41_RS07935: ABIE41_RS07935 - ABC transporter ATP-binding protein, at 1,632,383 to 1,633,177 _RS07935 ABIE41_RS07940: ABIE41_RS07940 - ABC transporter permease, at 1,633,174 to 1,633,944 _RS07940 ABIE41_RS07945: ABIE41_RS07945 - J domain-containing protein, at 1,633,972 to 1,634,586 _RS07945 Position (kb) 1632 1633 1634Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.454 kb on + strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.455 kb on - strand, within ABIE41_RS07930at 1631.541 kb on + strand, within ABIE41_RS07930at 1631.542 kb on - strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.790 kb on + strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.791 kb on - strand, within ABIE41_RS07930at 1631.854 kb on - strand, within ABIE41_RS07930at 1632.303 kb on + strandat 1632.304 kb on - strandat 1632.304 kb on - strandat 1632.429 kb on - strandat 1632.429 kb on - strandat 1632.740 kb on + strand, within ABIE41_RS07935at 1632.740 kb on + strand, within ABIE41_RS07935at 1632.741 kb on - strand, within ABIE41_RS07935at 1632.741 kb on - strand, within ABIE41_RS07935at 1632.741 kb on - strand, within ABIE41_RS07935at 1633.106 kb on + strandat 1633.106 kb on + strandat 1633.106 kb on + strandat 1633.106 kb on + strandat 1633.106 kb on + strandat 1633.106 kb on + strandat 1633.107 kb on - strandat 1633.107 kb on - strandat 1633.128 kb on + strandat 1633.150 kb on + strandat 1633.207 kb on + strandat 1633.207 kb on + strandat 1633.207 kb on + strandat 1633.207 kb on + strandat 1633.208 kb on - strandat 1633.208 kb on - strandat 1633.318 kb on + strand, within ABIE41_RS07940at 1633.334 kb on - strand, within ABIE41_RS07940at 1633.438 kb on + strand, within ABIE41_RS07940at 1633.438 kb on + strand, within ABIE41_RS07940at 1633.438 kb on + strand, within ABIE41_RS07940at 1633.438 kb on + strand, within ABIE41_RS07940at 1633.438 kb on + strand, within ABIE41_RS07940at 1633.438 kb on + strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.439 kb on - strand, within ABIE41_RS07940at 1633.448 kb on + strand, within ABIE41_RS07940at 1633.449 kb on - strand, within ABIE41_RS07940at 1633.696 kb on + strand, within ABIE41_RS07940at 1633.696 kb on + strand, within ABIE41_RS07940at 1633.696 kb on + strand, within ABIE41_RS07940at 1633.735 kb on + strand, within ABIE41_RS07940at 1633.736 kb on - strand, within ABIE41_RS07940at 1633.736 kb on - strand, within ABIE41_RS07940at 1633.736 kb on - strand, within ABIE41_RS07940at 1633.815 kb on + strand, within ABIE41_RS07940at 1633.816 kb on - strand, within ABIE41_RS07940at 1633.816 kb on - strand, within ABIE41_RS07940at 1634.004 kb on - strandat 1634.004 kb on - strandat 1634.090 kb on + strand, within ABIE41_RS07945at 1634.090 kb on + strand, within ABIE41_RS07945at 1634.090 kb on + strand, within ABIE41_RS07945at 1634.091 kb on - strand, within ABIE41_RS07945at 1634.091 kb on - strand, within ABIE41_RS07945at 1634.091 kb on - strand, within ABIE41_RS07945

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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1,631,454 + ABIE41_RS07930 0.26 +0.1
1,631,454 + ABIE41_RS07930 0.26 +0.5
1,631,454 + ABIE41_RS07930 0.26 -1.2
1,631,454 + ABIE41_RS07930 0.26 +0.7
1,631,454 + ABIE41_RS07930 0.26 +0.3
1,631,454 + ABIE41_RS07930 0.26 +0.8
1,631,454 + ABIE41_RS07930 0.26 -0.0
1,631,454 + ABIE41_RS07930 0.26 -0.2
1,631,454 + ABIE41_RS07930 0.26 -0.1
1,631,454 + ABIE41_RS07930 0.26 +0.2
1,631,454 + ABIE41_RS07930 0.26 -0.1
1,631,455 - ABIE41_RS07930 0.26 -3.2
1,631,455 - ABIE41_RS07930 0.26 +0.4
1,631,455 - ABIE41_RS07930 0.26 -1.2
1,631,455 - ABIE41_RS07930 0.26 +0.0
1,631,455 - ABIE41_RS07930 0.26 -0.8
1,631,455 - ABIE41_RS07930 0.26 +0.4
1,631,455 - ABIE41_RS07930 0.26 +0.2
1,631,455 - ABIE41_RS07930 0.26 +0.1
1,631,455 - ABIE41_RS07930 0.26 +0.5
1,631,455 - ABIE41_RS07930 0.26 -0.4
1,631,455 - ABIE41_RS07930 0.26 -0.1
1,631,455 - ABIE41_RS07930 0.26 +0.1
1,631,455 - ABIE41_RS07930 0.26 -2.2
1,631,455 - ABIE41_RS07930 0.26 +0.2
1,631,541 + ABIE41_RS07930 0.34 +3.5
1,631,542 - ABIE41_RS07930 0.35 +2.1
1,631,790 + ABIE41_RS07930 0.58 +0.9
1,631,790 + ABIE41_RS07930 0.58 -0.1
1,631,790 + ABIE41_RS07930 0.58 -0.2
1,631,790 + ABIE41_RS07930 0.58 +0.8
1,631,790 + ABIE41_RS07930 0.58 +0.1
1,631,791 - ABIE41_RS07930 0.58 +3.1
1,631,791 - ABIE41_RS07930 0.58 -0.1
1,631,791 - ABIE41_RS07930 0.58 -0.3
1,631,791 - ABIE41_RS07930 0.58 -0.8
1,631,791 - ABIE41_RS07930 0.58 -0.1
1,631,854 - ABIE41_RS07930 0.64 +0.3
1,632,303 + -0.1
1,632,304 - -0.0
1,632,304 - +0.5
1,632,429 - -0.2
1,632,429 - +0.6
1,632,740 + ABIE41_RS07935 0.45 +0.6
1,632,740 + ABIE41_RS07935 0.45 +0.2
1,632,741 - ABIE41_RS07935 0.45 -1.2
1,632,741 - ABIE41_RS07935 0.45 +0.1
1,632,741 - ABIE41_RS07935 0.45 +1.2
1,633,106 + -0.1
1,633,106 + +0.4
1,633,106 + +1.2
1,633,106 + -1.3
1,633,106 + -1.8
1,633,106 + -0.0
1,633,107 - -2.6
1,633,107 - -0.4
1,633,128 + -1.8
1,633,150 + -0.3
1,633,207 + -2.3
1,633,207 + -0.4
1,633,207 + -0.8
1,633,207 + +2.0
1,633,208 - +1.9
1,633,208 - -2.0
1,633,318 + ABIE41_RS07940 0.19 -1.7
1,633,334 - ABIE41_RS07940 0.21 -0.3
1,633,438 + ABIE41_RS07940 0.34 +0.5
1,633,438 + ABIE41_RS07940 0.34 +0.9
1,633,438 + ABIE41_RS07940 0.34 +0.0
1,633,438 + ABIE41_RS07940 0.34 +0.8
1,633,438 + ABIE41_RS07940 0.34 -1.1
1,633,438 + ABIE41_RS07940 0.34 -0.7
1,633,439 - ABIE41_RS07940 0.34 -1.1
1,633,439 - ABIE41_RS07940 0.34 +0.4
1,633,439 - ABIE41_RS07940 0.34 -1.4
1,633,439 - ABIE41_RS07940 0.34 -0.7
1,633,439 - ABIE41_RS07940 0.34 +1.0
1,633,439 - ABIE41_RS07940 0.34 -1.7
1,633,439 - ABIE41_RS07940 0.34 -0.4
1,633,439 - ABIE41_RS07940 0.34 +0.3
1,633,439 - ABIE41_RS07940 0.34 -0.2
1,633,448 + ABIE41_RS07940 0.36 -0.1
1,633,449 - ABIE41_RS07940 0.36 -0.3
1,633,696 + ABIE41_RS07940 0.68 -0.5
1,633,696 + ABIE41_RS07940 0.68 +0.1
1,633,696 + ABIE41_RS07940 0.68 +0.9
1,633,735 + ABIE41_RS07940 0.73 -0.3
1,633,736 - ABIE41_RS07940 0.73 -0.0
1,633,736 - ABIE41_RS07940 0.73 +0.8
1,633,736 - ABIE41_RS07940 0.73 +0.3
1,633,815 + ABIE41_RS07940 0.83 -1.1
1,633,816 - ABIE41_RS07940 0.83 +0.8
1,633,816 - ABIE41_RS07940 0.83 -0.4
1,634,004 - -0.9
1,634,004 - +0.9
1,634,090 + ABIE41_RS07945 0.19 -0.3
1,634,090 + ABIE41_RS07945 0.19 +1.2
1,634,090 + ABIE41_RS07945 0.19 +3.0
1,634,091 - ABIE41_RS07945 0.19 +0.3
1,634,091 - ABIE41_RS07945 0.19 -1.3
1,634,091 - ABIE41_RS07945 0.19 +0.2

Or see this region's nucleotide sequence