Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02100

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02090 and ABIE41_RS02095 are separated by 200 nucleotidesABIE41_RS02095 and ABIE41_RS02100 are separated by 93 nucleotidesABIE41_RS02100 and ABIE41_RS02105 are separated by 450 nucleotides ABIE41_RS02090: ABIE41_RS02090 - hypothetical protein, at 416,736 to 417,014 _RS02090 ABIE41_RS02095: ABIE41_RS02095 - DUF736 domain-containing protein, at 417,215 to 417,538 _RS02095 ABIE41_RS02100: ABIE41_RS02100 - hypothetical protein, at 417,632 to 418,171 _RS02100 ABIE41_RS02105: ABIE41_RS02105 - transposase, at 418,622 to 419,434 _RS02105 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 416.855 kb on + strand, within ABIE41_RS02090at 416.856 kb on - strand, within ABIE41_RS02090at 416.941 kb on + strand, within ABIE41_RS02090at 416.942 kb on - strand, within ABIE41_RS02090at 416.942 kb on - strand, within ABIE41_RS02090at 417.049 kb on - strandat 417.416 kb on + strand, within ABIE41_RS02095at 417.416 kb on + strand, within ABIE41_RS02095at 417.417 kb on - strand, within ABIE41_RS02095at 417.417 kb on - strand, within ABIE41_RS02095at 417.417 kb on - strand, within ABIE41_RS02095at 417.417 kb on - strand, within ABIE41_RS02095at 417.461 kb on + strand, within ABIE41_RS02095at 417.461 kb on + strand, within ABIE41_RS02095at 417.461 kb on + strand, within ABIE41_RS02095at 417.461 kb on + strand, within ABIE41_RS02095at 417.462 kb on - strand, within ABIE41_RS02095at 417.462 kb on - strand, within ABIE41_RS02095at 417.462 kb on - strand, within ABIE41_RS02095at 417.462 kb on - strand, within ABIE41_RS02095at 417.462 kb on - strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.494 kb on + strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.495 kb on - strand, within ABIE41_RS02095at 417.633 kb on + strandat 417.634 kb on - strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.669 kb on + strandat 417.670 kb on - strandat 417.670 kb on - strandat 417.670 kb on - strandat 417.670 kb on - strandat 417.670 kb on - strandat 417.670 kb on - strandat 417.744 kb on - strand, within ABIE41_RS02100at 417.744 kb on - strand, within ABIE41_RS02100at 417.752 kb on - strand, within ABIE41_RS02100at 417.884 kb on - strand, within ABIE41_RS02100at 417.909 kb on + strand, within ABIE41_RS02100at 417.910 kb on - strand, within ABIE41_RS02100at 417.910 kb on - strand, within ABIE41_RS02100at 417.910 kb on - strand, within ABIE41_RS02100at 417.910 kb on - strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.923 kb on + strand, within ABIE41_RS02100at 417.924 kb on - strand, within ABIE41_RS02100at 417.924 kb on - strand, within ABIE41_RS02100at 418.065 kb on - strand, within ABIE41_RS02100at 418.105 kb on + strand, within ABIE41_RS02100at 418.117 kb on + strand, within ABIE41_RS02100at 418.118 kb on - strandat 418.118 kb on - strandat 418.134 kb on - strandat 418.182 kb on + strandat 418.182 kb on + strandat 418.182 kb on + strandat 418.182 kb on + strandat 418.204 kb on - strandat 418.208 kb on + strandat 418.208 kb on + strandat 418.208 kb on + strandat 418.208 kb on + strandat 418.208 kb on + strandat 418.209 kb on - strandat 418.209 kb on - strandat 418.209 kb on - strandat 418.210 kb on + strandat 418.216 kb on + strandat 418.217 kb on + strandat 418.218 kb on - strandat 418.218 kb on - strandat 418.443 kb on + strandat 418.443 kb on + strandat 418.443 kb on + strandat 418.444 kb on - strandat 418.444 kb on - strandat 418.444 kb on - strandat 418.444 kb on - strandat 418.453 kb on + strandat 418.453 kb on + strandat 418.453 kb on + strandat 418.453 kb on + strandat 418.454 kb on - strandat 418.454 kb on - strandat 418.454 kb on - strandat 418.539 kb on - strandat 418.539 kb on - strandat 418.539 kb on - strandat 418.539 kb on - strandat 418.700 kb on + strandat 418.748 kb on - strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.806 kb on + strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.807 kb on - strand, within ABIE41_RS02105at 418.906 kb on + strand, within ABIE41_RS02105at 418.906 kb on + strand, within ABIE41_RS02105at 418.906 kb on + strand, within ABIE41_RS02105at 418.907 kb on - strand, within ABIE41_RS02105at 418.907 kb on - strand, within ABIE41_RS02105at 418.907 kb on - strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.012 kb on + strand, within ABIE41_RS02105at 419.013 kb on - strand, within ABIE41_RS02105at 419.013 kb on - strand, within ABIE41_RS02105at 419.013 kb on - strand, within ABIE41_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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416,855 + ABIE41_RS02090 0.43 +1.7
416,856 - ABIE41_RS02090 0.43 +2.3
416,941 + ABIE41_RS02090 0.73 +1.0
416,942 - ABIE41_RS02090 0.74 +0.7
416,942 - ABIE41_RS02090 0.74 +0.2
417,049 - -0.2
417,416 + ABIE41_RS02095 0.62 +0.4
417,416 + ABIE41_RS02095 0.62 -0.7
417,417 - ABIE41_RS02095 0.62 -0.8
417,417 - ABIE41_RS02095 0.62 +0.2
417,417 - ABIE41_RS02095 0.62 -0.6
417,417 - ABIE41_RS02095 0.62 -0.8
417,461 + ABIE41_RS02095 0.76 +0.6
417,461 + ABIE41_RS02095 0.76 -0.2
417,461 + ABIE41_RS02095 0.76 +0.7
417,461 + ABIE41_RS02095 0.76 +0.2
417,462 - ABIE41_RS02095 0.76 +0.3
417,462 - ABIE41_RS02095 0.76 +1.1
417,462 - ABIE41_RS02095 0.76 -3.3
417,462 - ABIE41_RS02095 0.76 +0.2
417,462 - ABIE41_RS02095 0.76 +0.5
417,494 + ABIE41_RS02095 0.86 -0.0
417,494 + ABIE41_RS02095 0.86 +0.3
417,494 + ABIE41_RS02095 0.86 +0.6
417,494 + ABIE41_RS02095 0.86 -0.9
417,494 + ABIE41_RS02095 0.86 -0.1
417,494 + ABIE41_RS02095 0.86 -0.9
417,494 + ABIE41_RS02095 0.86 +1.2
417,494 + ABIE41_RS02095 0.86 -0.7
417,494 + ABIE41_RS02095 0.86 +0.6
417,494 + ABIE41_RS02095 0.86 -1.0
417,494 + ABIE41_RS02095 0.86 +0.6
417,494 + ABIE41_RS02095 0.86 +0.2
417,494 + ABIE41_RS02095 0.86 +0.1
417,494 + ABIE41_RS02095 0.86 +0.1
417,495 - ABIE41_RS02095 0.86 -0.1
417,495 - ABIE41_RS02095 0.86 -0.4
417,495 - ABIE41_RS02095 0.86 +1.6
417,495 - ABIE41_RS02095 0.86 -0.3
417,495 - ABIE41_RS02095 0.86 -0.3
417,495 - ABIE41_RS02095 0.86 -1.1
417,495 - ABIE41_RS02095 0.86 +0.1
417,633 + -0.3
417,634 - +0.2
417,669 + -0.2
417,669 + -0.7
417,669 + -0.5
417,669 + +0.5
417,669 + +0.8
417,669 + -0.3
417,669 + +1.2
417,669 + -0.3
417,670 - -2.6
417,670 - -2.3
417,670 - +1.0
417,670 - -1.4
417,670 - +0.1
417,670 - +0.3
417,744 - ABIE41_RS02100 0.21 +0.3
417,744 - ABIE41_RS02100 0.21 +1.5
417,752 - ABIE41_RS02100 0.22 +0.1
417,884 - ABIE41_RS02100 0.47 -0.2
417,909 + ABIE41_RS02100 0.51 +0.0
417,910 - ABIE41_RS02100 0.51 +1.9
417,910 - ABIE41_RS02100 0.51 +1.0
417,910 - ABIE41_RS02100 0.51 +0.5
417,910 - ABIE41_RS02100 0.51 -0.8
417,923 + ABIE41_RS02100 0.54 +0.5
417,923 + ABIE41_RS02100 0.54 +0.4
417,923 + ABIE41_RS02100 0.54 +0.2
417,923 + ABIE41_RS02100 0.54 +0.3
417,923 + ABIE41_RS02100 0.54 -1.8
417,923 + ABIE41_RS02100 0.54 -0.8
417,923 + ABIE41_RS02100 0.54 -3.1
417,924 - ABIE41_RS02100 0.54 -0.1
417,924 - ABIE41_RS02100 0.54 -0.3
418,065 - ABIE41_RS02100 0.80 +0.9
418,105 + ABIE41_RS02100 0.88 -0.3
418,117 + ABIE41_RS02100 0.90 -0.9
418,118 - +0.3
418,118 - -0.2
418,134 - +0.7
418,182 + +1.1
418,182 + -0.2
418,182 + +0.4
418,182 + -0.1
418,204 - -0.6
418,208 + -0.1
418,208 + +0.2
418,208 + +0.1
418,208 + -0.1
418,208 + -0.5
418,209 - -1.1
418,209 - -0.1
418,209 - +0.2
418,210 + -0.2
418,216 + +0.1
418,217 + -1.2
418,218 - -1.6
418,218 - +0.2
418,443 + -2.1
418,443 + +1.4
418,443 + -0.2
418,444 - +0.6
418,444 - -1.1
418,444 - +1.6
418,444 - +0.1
418,453 + -1.4
418,453 + +1.2
418,453 + +0.5
418,453 + +0.5
418,454 - -3.1
418,454 - +0.2
418,454 - -1.2
418,539 - +2.8
418,539 - +2.7
418,539 - -0.3
418,539 - -0.8
418,700 + -0.3
418,748 - ABIE41_RS02105 0.15 +1.5
418,806 + ABIE41_RS02105 0.23 -0.3
418,806 + ABIE41_RS02105 0.23 +0.2
418,806 + ABIE41_RS02105 0.23 -1.3
418,806 + ABIE41_RS02105 0.23 +0.2
418,806 + ABIE41_RS02105 0.23 -0.1
418,806 + ABIE41_RS02105 0.23 -0.4
418,806 + ABIE41_RS02105 0.23 +0.3
418,806 + ABIE41_RS02105 0.23 -0.1
418,806 + ABIE41_RS02105 0.23 -0.2
418,807 - ABIE41_RS02105 0.23 +0.2
418,807 - ABIE41_RS02105 0.23 -0.7
418,807 - ABIE41_RS02105 0.23 +1.0
418,807 - ABIE41_RS02105 0.23 +0.4
418,807 - ABIE41_RS02105 0.23 +0.3
418,807 - ABIE41_RS02105 0.23 +0.3
418,807 - ABIE41_RS02105 0.23 -1.4
418,807 - ABIE41_RS02105 0.23 -0.7
418,807 - ABIE41_RS02105 0.23 -2.1
418,807 - ABIE41_RS02105 0.23 +0.2
418,807 - ABIE41_RS02105 0.23 +0.2
418,807 - ABIE41_RS02105 0.23 -1.4
418,807 - ABIE41_RS02105 0.23 -1.1
418,906 + ABIE41_RS02105 0.35 +0.8
418,906 + ABIE41_RS02105 0.35 -0.3
418,906 + ABIE41_RS02105 0.35 +0.7
418,907 - ABIE41_RS02105 0.35 +0.4
418,907 - ABIE41_RS02105 0.35 -2.6
418,907 - ABIE41_RS02105 0.35 +0.9
419,012 + ABIE41_RS02105 0.48 +0.0
419,012 + ABIE41_RS02105 0.48 +0.2
419,012 + ABIE41_RS02105 0.48 +0.9
419,012 + ABIE41_RS02105 0.48 +1.0
419,012 + ABIE41_RS02105 0.48 +0.2
419,012 + ABIE41_RS02105 0.48 +0.3
419,012 + ABIE41_RS02105 0.48 -0.8
419,013 - ABIE41_RS02105 0.48 +1.0
419,013 - ABIE41_RS02105 0.48 +0.4
419,013 - ABIE41_RS02105 0.48 -0.6

Or see this region's nucleotide sequence