Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02085 and ABIE41_RS02090 are separated by 839 nucleotides ABIE41_RS02090 and ABIE41_RS02095 are separated by 200 nucleotides ABIE41_RS02095 and ABIE41_RS02100 are separated by 93 nucleotides
ABIE41_RS02085: ABIE41_RS02085 - hypothetical protein, at 415,411 to 415,896
_RS02085
ABIE41_RS02090: ABIE41_RS02090 - hypothetical protein, at 416,736 to 417,014
_RS02090
ABIE41_RS02095: ABIE41_RS02095 - DUF736 domain-containing protein, at 417,215 to 417,538
_RS02095
ABIE41_RS02100: ABIE41_RS02100 - hypothetical protein, at 417,632 to 418,171
_RS02100
Position (kb) 416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.994 kb on + strand at 416.158 kb on + strand at 416.159 kb on - strand at 416.170 kb on + strand at 416.170 kb on + strand at 416.171 kb on - strand at 416.305 kb on - strand at 416.305 kb on - strand at 416.443 kb on + strand at 416.444 kb on - strand at 416.572 kb on - strand at 416.855 kb on + strand, within ABIE41_RS02090 at 416.856 kb on - strand, within ABIE41_RS02090 at 416.941 kb on + strand, within ABIE41_RS02090 at 416.942 kb on - strand, within ABIE41_RS02090 at 416.942 kb on - strand, within ABIE41_RS02090 at 417.049 kb on - strand at 417.416 kb on + strand, within ABIE41_RS02095 at 417.416 kb on + strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.633 kb on + strand at 417.634 kb on - strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.744 kb on - strand, within ABIE41_RS02100 at 417.744 kb on - strand, within ABIE41_RS02100 at 417.752 kb on - strand, within ABIE41_RS02100 at 417.884 kb on - strand, within ABIE41_RS02100 at 417.909 kb on + strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.924 kb on - strand, within ABIE41_RS02100 at 417.924 kb on - strand, within ABIE41_RS02100
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 415,994 + -0.3 416,158 + -1.7 416,159 - -0.0 416,170 + -0.2 416,170 + +0.6 416,171 - -0.0 416,305 - +0.2 416,305 - +0.2 416,443 + -0.4 416,444 - +0.2 416,572 - +0.4 416,855 + ABIE41_RS02090 0.43 +1.7 416,856 - ABIE41_RS02090 0.43 +2.3 416,941 + ABIE41_RS02090 0.73 +1.0 416,942 - ABIE41_RS02090 0.74 +0.7 416,942 - ABIE41_RS02090 0.74 +0.2 417,049 - -0.2 417,416 + ABIE41_RS02095 0.62 +0.4 417,416 + ABIE41_RS02095 0.62 -0.7 417,417 - ABIE41_RS02095 0.62 -0.8 417,417 - ABIE41_RS02095 0.62 +0.2 417,417 - ABIE41_RS02095 0.62 -0.6 417,417 - ABIE41_RS02095 0.62 -0.8 417,461 + ABIE41_RS02095 0.76 +0.6 417,461 + ABIE41_RS02095 0.76 -0.2 417,461 + ABIE41_RS02095 0.76 +0.7 417,461 + ABIE41_RS02095 0.76 +0.2 417,462 - ABIE41_RS02095 0.76 +0.3 417,462 - ABIE41_RS02095 0.76 +1.1 417,462 - ABIE41_RS02095 0.76 -3.3 417,462 - ABIE41_RS02095 0.76 +0.2 417,462 - ABIE41_RS02095 0.76 +0.5 417,494 + ABIE41_RS02095 0.86 -0.0 417,494 + ABIE41_RS02095 0.86 +0.3 417,494 + ABIE41_RS02095 0.86 +0.6 417,494 + ABIE41_RS02095 0.86 -0.9 417,494 + ABIE41_RS02095 0.86 -0.1 417,494 + ABIE41_RS02095 0.86 -0.9 417,494 + ABIE41_RS02095 0.86 +1.2 417,494 + ABIE41_RS02095 0.86 -0.7 417,494 + ABIE41_RS02095 0.86 +0.6 417,494 + ABIE41_RS02095 0.86 -1.0 417,494 + ABIE41_RS02095 0.86 +0.6 417,494 + ABIE41_RS02095 0.86 +0.2 417,494 + ABIE41_RS02095 0.86 +0.1 417,494 + ABIE41_RS02095 0.86 +0.1 417,495 - ABIE41_RS02095 0.86 -0.1 417,495 - ABIE41_RS02095 0.86 -0.4 417,495 - ABIE41_RS02095 0.86 +1.6 417,495 - ABIE41_RS02095 0.86 -0.3 417,495 - ABIE41_RS02095 0.86 -0.3 417,495 - ABIE41_RS02095 0.86 -1.1 417,495 - ABIE41_RS02095 0.86 +0.1 417,633 + -0.3 417,634 - +0.2 417,669 + -0.2 417,669 + -0.7 417,669 + -0.5 417,669 + +0.5 417,669 + +0.8 417,669 + -0.3 417,669 + +1.2 417,669 + -0.3 417,670 - -2.6 417,670 - -2.3 417,670 - +1.0 417,670 - -1.4 417,670 - +0.1 417,670 - +0.3 417,744 - ABIE41_RS02100 0.21 +0.3 417,744 - ABIE41_RS02100 0.21 +1.5 417,752 - ABIE41_RS02100 0.22 +0.1 417,884 - ABIE41_RS02100 0.47 -0.2 417,909 + ABIE41_RS02100 0.51 +0.0 417,910 - ABIE41_RS02100 0.51 +1.9 417,910 - ABIE41_RS02100 0.51 +1.0 417,910 - ABIE41_RS02100 0.51 +0.5 417,910 - ABIE41_RS02100 0.51 -0.8 417,923 + ABIE41_RS02100 0.54 +0.5 417,923 + ABIE41_RS02100 0.54 +0.4 417,923 + ABIE41_RS02100 0.54 +0.2 417,923 + ABIE41_RS02100 0.54 +0.3 417,923 + ABIE41_RS02100 0.54 -1.8 417,923 + ABIE41_RS02100 0.54 -0.8 417,923 + ABIE41_RS02100 0.54 -3.1 417,924 - ABIE41_RS02100 0.54 -0.1 417,924 - ABIE41_RS02100 0.54 -0.3
Or see this region's nucleotide sequence