Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02080

Experiment: Ying_AminoAcid20 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS02075 and ABIE41_RS02080 are separated by 7 nucleotidesABIE41_RS02080 and ABIE41_RS02085 are separated by 279 nucleotides ABIE41_RS02075: ABIE41_RS02075 - hypothetical protein, at 413,124 to 414,335 _RS02075 ABIE41_RS02080: ABIE41_RS02080 - SprT-like domain-containing protein, at 414,343 to 415,131 _RS02080 ABIE41_RS02085: ABIE41_RS02085 - hypothetical protein, at 415,411 to 415,896 _RS02085 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 413.411 kb on + strand, within ABIE41_RS02075at 413.498 kb on + strand, within ABIE41_RS02075at 413.499 kb on - strand, within ABIE41_RS02075at 413.499 kb on - strand, within ABIE41_RS02075at 413.567 kb on + strand, within ABIE41_RS02075at 413.670 kb on - strand, within ABIE41_RS02075at 413.670 kb on - strand, within ABIE41_RS02075at 413.680 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.681 kb on + strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.682 kb on - strand, within ABIE41_RS02075at 413.952 kb on - strand, within ABIE41_RS02075at 414.192 kb on + strand, within ABIE41_RS02075at 414.218 kb on + strandat 414.219 kb on - strandat 414.219 kb on - strandat 414.446 kb on + strand, within ABIE41_RS02080at 414.446 kb on + strand, within ABIE41_RS02080at 414.512 kb on + strand, within ABIE41_RS02080at 414.512 kb on + strand, within ABIE41_RS02080at 414.512 kb on + strand, within ABIE41_RS02080at 414.512 kb on + strand, within ABIE41_RS02080at 414.512 kb on + strand, within ABIE41_RS02080at 414.512 kb on + strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.513 kb on - strand, within ABIE41_RS02080at 414.603 kb on + strand, within ABIE41_RS02080at 414.603 kb on + strand, within ABIE41_RS02080at 414.603 kb on + strand, within ABIE41_RS02080at 414.603 kb on + strand, within ABIE41_RS02080at 414.603 kb on + strand, within ABIE41_RS02080at 414.603 kb on + strand, within ABIE41_RS02080at 414.604 kb on - strand, within ABIE41_RS02080at 414.604 kb on - strand, within ABIE41_RS02080at 414.684 kb on - strand, within ABIE41_RS02080at 414.939 kb on - strand, within ABIE41_RS02080at 414.960 kb on - strand, within ABIE41_RS02080at 414.960 kb on - strand, within ABIE41_RS02080at 415.010 kb on + strand, within ABIE41_RS02080at 415.010 kb on + strand, within ABIE41_RS02080at 415.010 kb on + strand, within ABIE41_RS02080at 415.010 kb on + strand, within ABIE41_RS02080at 415.011 kb on - strand, within ABIE41_RS02080at 415.011 kb on - strand, within ABIE41_RS02080at 415.011 kb on - strand, within ABIE41_RS02080at 415.011 kb on - strand, within ABIE41_RS02080at 415.035 kb on + strand, within ABIE41_RS02080at 415.109 kb on + strandat 415.110 kb on - strandat 415.173 kb on + strandat 415.173 kb on + strandat 415.174 kb on - strandat 415.174 kb on - strandat 415.254 kb on - strandat 415.278 kb on - strandat 415.278 kb on - strandat 415.329 kb on + strandat 415.329 kb on + strandat 415.330 kb on - strandat 415.330 kb on - strandat 415.330 kb on - strandat 415.357 kb on - strandat 415.438 kb on + strandat 415.438 kb on + strandat 415.438 kb on + strandat 415.438 kb on + strandat 415.438 kb on + strandat 415.438 kb on + strandat 415.439 kb on - strandat 415.439 kb on - strandat 415.439 kb on - strandat 415.439 kb on - strandat 415.577 kb on + strand, within ABIE41_RS02085at 415.577 kb on + strand, within ABIE41_RS02085at 415.578 kb on - strand, within ABIE41_RS02085at 415.578 kb on - strand, within ABIE41_RS02085at 415.578 kb on - strand, within ABIE41_RS02085at 415.578 kb on - strand, within ABIE41_RS02085at 415.601 kb on + strand, within ABIE41_RS02085at 415.601 kb on + strand, within ABIE41_RS02085at 415.602 kb on - strand, within ABIE41_RS02085at 415.602 kb on - strand, within ABIE41_RS02085at 415.602 kb on - strand, within ABIE41_RS02085at 415.994 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
remove
413,411 + ABIE41_RS02075 0.24 -0.3
413,498 + ABIE41_RS02075 0.31 +0.3
413,499 - ABIE41_RS02075 0.31 -0.2
413,499 - ABIE41_RS02075 0.31 -0.2
413,567 + ABIE41_RS02075 0.37 +0.7
413,670 - ABIE41_RS02075 0.45 +0.3
413,670 - ABIE41_RS02075 0.45 -0.0
413,680 + ABIE41_RS02075 0.46 +0.0
413,681 + ABIE41_RS02075 0.46 -3.2
413,681 + ABIE41_RS02075 0.46 +0.5
413,681 + ABIE41_RS02075 0.46 +0.2
413,681 + ABIE41_RS02075 0.46 +0.0
413,681 + ABIE41_RS02075 0.46 -1.7
413,681 + ABIE41_RS02075 0.46 -1.4
413,681 + ABIE41_RS02075 0.46 +0.0
413,682 - ABIE41_RS02075 0.46 +1.6
413,682 - ABIE41_RS02075 0.46 -0.5
413,682 - ABIE41_RS02075 0.46 -0.3
413,682 - ABIE41_RS02075 0.46 +0.2
413,682 - ABIE41_RS02075 0.46 +0.4
413,682 - ABIE41_RS02075 0.46 +0.0
413,682 - ABIE41_RS02075 0.46 -0.5
413,682 - ABIE41_RS02075 0.46 +0.2
413,952 - ABIE41_RS02075 0.68 +0.2
414,192 + ABIE41_RS02075 0.88 -2.2
414,218 + -0.9
414,219 - -1.0
414,219 - +0.3
414,446 + ABIE41_RS02080 0.13 -0.2
414,446 + ABIE41_RS02080 0.13 -0.1
414,512 + ABIE41_RS02080 0.21 -2.8
414,512 + ABIE41_RS02080 0.21 +0.3
414,512 + ABIE41_RS02080 0.21 +1.1
414,512 + ABIE41_RS02080 0.21 -0.8
414,512 + ABIE41_RS02080 0.21 -0.6
414,512 + ABIE41_RS02080 0.21 +0.7
414,513 - ABIE41_RS02080 0.22 -0.3
414,513 - ABIE41_RS02080 0.22 -0.0
414,513 - ABIE41_RS02080 0.22 -0.1
414,513 - ABIE41_RS02080 0.22 -0.6
414,513 - ABIE41_RS02080 0.22 +0.9
414,513 - ABIE41_RS02080 0.22 +0.2
414,513 - ABIE41_RS02080 0.22 -0.3
414,513 - ABIE41_RS02080 0.22 +0.2
414,603 + ABIE41_RS02080 0.33 +1.5
414,603 + ABIE41_RS02080 0.33 +0.5
414,603 + ABIE41_RS02080 0.33 +0.8
414,603 + ABIE41_RS02080 0.33 +1.0
414,603 + ABIE41_RS02080 0.33 +0.1
414,603 + ABIE41_RS02080 0.33 -0.3
414,604 - ABIE41_RS02080 0.33 -2.4
414,604 - ABIE41_RS02080 0.33 +0.9
414,684 - ABIE41_RS02080 0.43 -0.7
414,939 - ABIE41_RS02080 0.76 -0.4
414,960 - ABIE41_RS02080 0.78 +0.1
414,960 - ABIE41_RS02080 0.78 -0.4
415,010 + ABIE41_RS02080 0.85 +1.1
415,010 + ABIE41_RS02080 0.85 +0.3
415,010 + ABIE41_RS02080 0.85 +0.3
415,010 + ABIE41_RS02080 0.85 -0.3
415,011 - ABIE41_RS02080 0.85 +0.8
415,011 - ABIE41_RS02080 0.85 -0.2
415,011 - ABIE41_RS02080 0.85 +0.3
415,011 - ABIE41_RS02080 0.85 -0.1
415,035 + ABIE41_RS02080 0.88 -0.7
415,109 + +0.9
415,110 - +0.9
415,173 + +1.1
415,173 + -0.9
415,174 - +1.2
415,174 - -0.6
415,254 - -1.1
415,278 - +0.1
415,278 - +0.4
415,329 + +1.0
415,329 + -0.0
415,330 - -1.3
415,330 - -0.8
415,330 - -0.3
415,357 - -0.6
415,438 + -0.2
415,438 + -0.6
415,438 + +0.1
415,438 + -1.6
415,438 + +0.3
415,438 + -0.4
415,439 - -3.4
415,439 - +2.7
415,439 - +0.9
415,439 - +1.6
415,577 + ABIE41_RS02085 0.34 -2.2
415,577 + ABIE41_RS02085 0.34 -0.3
415,578 - ABIE41_RS02085 0.34 -1.4
415,578 - ABIE41_RS02085 0.34 +0.3
415,578 - ABIE41_RS02085 0.34 -0.0
415,578 - ABIE41_RS02085 0.34 -0.7
415,601 + ABIE41_RS02085 0.39 -0.8
415,601 + ABIE41_RS02085 0.39 +0.9
415,602 - ABIE41_RS02085 0.39 -1.6
415,602 - ABIE41_RS02085 0.39 -1.4
415,602 - ABIE41_RS02085 0.39 +0.2
415,994 + -0.3

Or see this region's nucleotide sequence