Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21220 and ABIE41_RS21225 overlap by 1 nucleotides ABIE41_RS21225 and ABIE41_RS21230 are separated by 94 nucleotides ABIE41_RS21230 and ABIE41_RS21235 are separated by 86 nucleotides
ABIE41_RS21220: ABIE41_RS21220 - hypothetical protein, at 4,361,208 to 4,361,678
_RS21220
ABIE41_RS21225: ABIE41_RS21225 - glutathione S-transferase, at 4,361,678 to 4,362,289
_RS21225
ABIE41_RS21230: ABIE41_RS21230 - thermonuclease family protein, at 4,362,384 to 4,362,935
_RS21230
ABIE41_RS21235: ABIE41_RS21235 - HAMP domain-containing sensor histidine kinase, at 4,363,022 to 4,364,539
_RS21235
Position (kb) 4362
4363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4361.431 kb on + strand, within ABIE41_RS21220 at 4361.431 kb on + strand, within ABIE41_RS21220 at 4361.432 kb on - strand, within ABIE41_RS21220 at 4361.432 kb on - strand, within ABIE41_RS21220 at 4361.434 kb on + strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.435 kb on - strand, within ABIE41_RS21220 at 4361.437 kb on + strand, within ABIE41_RS21220 at 4361.437 kb on + strand, within ABIE41_RS21220 at 4361.554 kb on + strand, within ABIE41_RS21220 at 4361.555 kb on - strand, within ABIE41_RS21220 at 4361.797 kb on + strand, within ABIE41_RS21225 at 4361.798 kb on - strand, within ABIE41_RS21225 at 4362.072 kb on + strand, within ABIE41_RS21225 at 4362.073 kb on - strand, within ABIE41_RS21225 at 4362.280 kb on - strand at 4362.280 kb on - strand at 4362.280 kb on - strand at 4362.373 kb on + strand at 4362.373 kb on + strand at 4362.373 kb on + strand at 4362.374 kb on - strand at 4362.374 kb on - strand at 4362.374 kb on - strand at 4362.482 kb on - strand, within ABIE41_RS21230 at 4362.491 kb on - strand, within ABIE41_RS21230 at 4362.572 kb on - strand, within ABIE41_RS21230 at 4362.947 kb on + strand at 4362.948 kb on - strand at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.271 kb on + strand, within ABIE41_RS21235 at 4363.272 kb on - strand, within ABIE41_RS21235 at 4363.550 kb on + strand, within ABIE41_RS21235 at 4363.550 kb on + strand, within ABIE41_RS21235 at 4363.551 kb on - strand, within ABIE41_RS21235 at 4363.682 kb on + strand, within ABIE41_RS21235 at 4363.928 kb on + strand, within ABIE41_RS21235 at 4363.928 kb on + strand, within ABIE41_RS21235
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 4,361,431 + ABIE41_RS21220 0.47 +0.8 4,361,431 + ABIE41_RS21220 0.47 -0.5 4,361,432 - ABIE41_RS21220 0.48 -0.1 4,361,432 - ABIE41_RS21220 0.48 -2.9 4,361,434 + ABIE41_RS21220 0.48 -0.2 4,361,435 - ABIE41_RS21220 0.48 -0.5 4,361,435 - ABIE41_RS21220 0.48 +0.4 4,361,435 - ABIE41_RS21220 0.48 +0.0 4,361,435 - ABIE41_RS21220 0.48 +0.0 4,361,437 + ABIE41_RS21220 0.49 -0.1 4,361,437 + ABIE41_RS21220 0.49 +0.9 4,361,554 + ABIE41_RS21220 0.73 -0.3 4,361,555 - ABIE41_RS21220 0.74 -0.1 4,361,797 + ABIE41_RS21225 0.19 -0.9 4,361,798 - ABIE41_RS21225 0.20 -0.7 4,362,072 + ABIE41_RS21225 0.64 -1.1 4,362,073 - ABIE41_RS21225 0.65 +2.1 4,362,280 - +0.8 4,362,280 - -0.8 4,362,280 - +0.1 4,362,373 + +1.2 4,362,373 + +0.1 4,362,373 + +1.0 4,362,374 - -0.6 4,362,374 - +0.1 4,362,374 - +0.6 4,362,482 - ABIE41_RS21230 0.18 +1.3 4,362,491 - ABIE41_RS21230 0.19 -0.3 4,362,572 - ABIE41_RS21230 0.34 -1.1 4,362,947 + -1.5 4,362,948 - -0.2 4,363,271 + ABIE41_RS21235 0.16 -0.2 4,363,271 + ABIE41_RS21235 0.16 +0.3 4,363,271 + ABIE41_RS21235 0.16 +0.2 4,363,271 + ABIE41_RS21235 0.16 +2.4 4,363,271 + ABIE41_RS21235 0.16 +1.9 4,363,272 - ABIE41_RS21235 0.16 -0.6 4,363,550 + ABIE41_RS21235 0.35 -1.5 4,363,550 + ABIE41_RS21235 0.35 -1.8 4,363,551 - ABIE41_RS21235 0.35 -1.1 4,363,682 + ABIE41_RS21235 0.43 +0.1 4,363,928 + ABIE41_RS21235 0.60 -0.8 4,363,928 + ABIE41_RS21235 0.60 +0.0
Or see this region's nucleotide sequence