Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21090

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
4,336,049	+				+0.4
4,336,049	+				+0.8
4,336,050	-				+0.0
4,336,050	-				+0.1
4,336,156	+				-1.2
4,336,269	-				-1.4
4,336,300	+		ABIE41_RS21085	0.12	-0.7
4,336,493	+		ABIE41_RS21085	0.36	+0.1
4,336,494	-		ABIE41_RS21085	0.36	-0.2
4,336,500	-		ABIE41_RS21085	0.36	+0.0
4,336,589	+		ABIE41_RS21085	0.48	-0.1
4,336,589	+		ABIE41_RS21085	0.48	+0.5
4,336,590	-		ABIE41_RS21085	0.48	+0.4
4,336,746	-		ABIE41_RS21085	0.67	+0.6
4,336,982	+				-0.2
4,336,982	+				-0.4
4,336,982	+				-0.4
4,336,982	+				+0.7
4,336,982	+				+1.9
4,336,982	+				-0.5
4,336,982	+				-0.2
4,336,982	+				-0.5
4,336,983	-				-1.9
4,336,983	-				-1.3
4,336,983	-				-2.5
4,336,983	-				-1.3
4,336,983	-				+1.2
4,336,983	-				-1.6
4,337,015	-				-1.1
4,337,320	+		ABIE41_RS21090	0.31	-1.6
4,337,321	-		ABIE41_RS21090	0.31	+1.2
4,337,321	-		ABIE41_RS21090	0.31	-0.3
4,337,321	-		ABIE41_RS21090	0.31	+1.0
4,337,321	-		ABIE41_RS21090	0.31	+0.3
4,337,569	+		ABIE41_RS21090	0.56	-1.1
4,337,591	+		ABIE41_RS21090	0.58	+1.7
4,337,761	+		ABIE41_RS21090	0.75	+0.5
4,337,761	+		ABIE41_RS21090	0.75	-0.4
4,337,762	-		ABIE41_RS21090	0.75	-0.7
4,337,762	-		ABIE41_RS21090	0.75	-1.9
4,337,762	-		ABIE41_RS21090	0.75	-1.1
4,337,762	-		ABIE41_RS21090	0.75	+0.3
4,337,762	-		ABIE41_RS21090	0.75	+0.4
4,337,762	-		ABIE41_RS21090	0.75	-0.6
4,337,762	-		ABIE41_RS21090	0.75	-0.9
4,337,996	+				+1.4
4,337,996	+				-2.0
4,337,997	-				+2.1
4,337,998	+				+0.4
4,337,998	+				+0.4
4,337,999	-				+0.1
4,338,064	-				+0.9
4,338,064	-				-3.0
4,338,064	-				-0.8
4,338,119	+				-0.4
4,338,119	+				+0.4
4,338,120	-				-0.1
4,338,374	+		ABIE41_RS21095	0.73	+1.6
4,338,374	+		ABIE41_RS21095	0.73	+2.2
4,338,374	+		ABIE41_RS21095	0.73	+0.2
4,338,374	+		ABIE41_RS21095	0.73	+1.1
4,338,374	+		ABIE41_RS21095	0.73	-0.3
4,338,374	+		ABIE41_RS21095	0.73	+1.2
4,338,375	-		ABIE41_RS21095	0.73	+0.6
4,338,375	-		ABIE41_RS21095	0.73	+0.4
4,338,375	-		ABIE41_RS21095	0.73	-0.5
4,338,375	-		ABIE41_RS21095	0.73	-0.1
4,338,375	-		ABIE41_RS21095	0.73	+1.0
4,338,375	-		ABIE41_RS21095	0.73	+1.5
4,338,792	+		ABIE41_RS21100	0.28	+0.2
4,338,793	-		ABIE41_RS21100	0.28	+1.3
4,338,793	-		ABIE41_RS21100	0.28	-0.0
4,338,849	+		ABIE41_RS21100	0.38	+0.0
4,338,849	+		ABIE41_RS21100	0.38	+0.7