Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20960 and ABIE41_RS20965 are separated by 6 nucleotides ABIE41_RS20965 and ABIE41_RS20970 are separated by 141 nucleotides
ABIE41_RS20960: ABIE41_RS20960 - tripartite tricarboxylate transporter permease, at 4,312,565 to 4,314,064
_RS20960
ABIE41_RS20965: ABIE41_RS20965 - aldehyde reductase, at 4,314,071 to 4,315,117
_RS20965
ABIE41_RS20970: ABIE41_RS20970 - APC family permease, at 4,315,259 to 4,316,683
_RS20970
Position (kb) 4314
4315
4316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4313.101 kb on - strand, within ABIE41_RS20960 at 4313.101 kb on - strand, within ABIE41_RS20960 at 4313.101 kb on - strand, within ABIE41_RS20960 at 4313.402 kb on + strand, within ABIE41_RS20960 at 4313.402 kb on + strand, within ABIE41_RS20960 at 4313.403 kb on - strand, within ABIE41_RS20960 at 4313.582 kb on + strand, within ABIE41_RS20960 at 4313.742 kb on - strand, within ABIE41_RS20960 at 4313.742 kb on - strand, within ABIE41_RS20960 at 4313.837 kb on + strand, within ABIE41_RS20960 at 4313.852 kb on + strand, within ABIE41_RS20960 at 4313.853 kb on - strand, within ABIE41_RS20960 at 4314.643 kb on - strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.860 kb on + strand, within ABIE41_RS20965 at 4314.861 kb on - strand, within ABIE41_RS20965 at 4314.861 kb on - strand, within ABIE41_RS20965 at 4314.862 kb on + strand, within ABIE41_RS20965 at 4314.863 kb on - strand, within ABIE41_RS20965 at 4314.863 kb on - strand, within ABIE41_RS20965 at 4315.382 kb on + strand at 4315.382 kb on + strand at 4315.382 kb on + strand at 4315.382 kb on + strand at 4315.382 kb on + strand at 4315.382 kb on + strand at 4315.383 kb on - strand at 4315.383 kb on - strand at 4315.383 kb on - strand at 4315.383 kb on - strand at 4315.383 kb on - strand at 4315.462 kb on - strand, within ABIE41_RS20970 at 4315.478 kb on + strand, within ABIE41_RS20970 at 4315.526 kb on + strand, within ABIE41_RS20970 at 4315.527 kb on - strand, within ABIE41_RS20970 at 4316.036 kb on + strand, within ABIE41_RS20970 at 4316.036 kb on + strand, within ABIE41_RS20970 at 4316.036 kb on + strand, within ABIE41_RS20970 at 4316.036 kb on + strand, within ABIE41_RS20970 at 4316.037 kb on - strand, within ABIE41_RS20970 at 4316.037 kb on - strand, within ABIE41_RS20970 at 4316.037 kb on - strand, within ABIE41_RS20970 at 4316.037 kb on - strand, within ABIE41_RS20970 at 4316.037 kb on - strand, within ABIE41_RS20970 at 4316.037 kb on - strand, within ABIE41_RS20970 at 4316.109 kb on + strand, within ABIE41_RS20970 at 4316.110 kb on - strand, within ABIE41_RS20970
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 4,313,101 - ABIE41_RS20960 0.36 +0.9 4,313,101 - ABIE41_RS20960 0.36 +0.6 4,313,101 - ABIE41_RS20960 0.36 -1.7 4,313,402 + ABIE41_RS20960 0.56 -0.1 4,313,402 + ABIE41_RS20960 0.56 +0.2 4,313,403 - ABIE41_RS20960 0.56 -1.6 4,313,582 + ABIE41_RS20960 0.68 +0.0 4,313,742 - ABIE41_RS20960 0.78 +0.6 4,313,742 - ABIE41_RS20960 0.78 -0.3 4,313,837 + ABIE41_RS20960 0.85 +0.6 4,313,852 + ABIE41_RS20960 0.86 -2.1 4,313,853 - ABIE41_RS20960 0.86 +2.3 4,314,643 - ABIE41_RS20965 0.55 +0.5 4,314,860 + ABIE41_RS20965 0.75 -0.0 4,314,860 + ABIE41_RS20965 0.75 +0.7 4,314,860 + ABIE41_RS20965 0.75 -1.2 4,314,860 + ABIE41_RS20965 0.75 +0.4 4,314,861 - ABIE41_RS20965 0.75 -0.3 4,314,861 - ABIE41_RS20965 0.75 +0.9 4,314,862 + ABIE41_RS20965 0.76 +0.4 4,314,863 - ABIE41_RS20965 0.76 -1.3 4,314,863 - ABIE41_RS20965 0.76 -2.5 4,315,382 + -1.3 4,315,382 + -0.9 4,315,382 + -0.9 4,315,382 + -0.3 4,315,382 + -0.8 4,315,382 + +0.5 4,315,383 - +0.6 4,315,383 - -0.0 4,315,383 - -2.7 4,315,383 - -0.3 4,315,383 - -2.7 4,315,462 - ABIE41_RS20970 0.14 +0.6 4,315,478 + ABIE41_RS20970 0.15 +0.1 4,315,526 + ABIE41_RS20970 0.19 +0.3 4,315,527 - ABIE41_RS20970 0.19 +1.7 4,316,036 + ABIE41_RS20970 0.55 +0.1 4,316,036 + ABIE41_RS20970 0.55 -0.2 4,316,036 + ABIE41_RS20970 0.55 -0.8 4,316,036 + ABIE41_RS20970 0.55 +0.1 4,316,037 - ABIE41_RS20970 0.55 +0.7 4,316,037 - ABIE41_RS20970 0.55 -2.8 4,316,037 - ABIE41_RS20970 0.55 -1.9 4,316,037 - ABIE41_RS20970 0.55 -2.5 4,316,037 - ABIE41_RS20970 0.55 +0.7 4,316,037 - ABIE41_RS20970 0.55 -0.6 4,316,109 + ABIE41_RS20970 0.60 +1.1 4,316,110 - ABIE41_RS20970 0.60 +0.2
Or see this region's nucleotide sequence