Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18690

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,847,611	+				-2.0
3,848,134	+		ABIE41_RS18685	0.51	-1.0
3,848,135	-		ABIE41_RS18685	0.51	-0.9
3,848,135	-		ABIE41_RS18685	0.51	+0.1
3,848,135	-		ABIE41_RS18685	0.51	-1.4
3,848,338	+		ABIE41_RS18685	0.82	-0.3
3,848,338	+		ABIE41_RS18685	0.82	-0.6
3,848,338	+		ABIE41_RS18685	0.82	+0.5
3,848,338	+		ABIE41_RS18685	0.82	-1.4
3,848,339	-		ABIE41_RS18685	0.82	-0.4
3,848,434	+				-0.2
3,848,434	+				+0.1
3,848,435	-				+1.0
3,848,435	-				+3.1
3,848,435	-				+0.3
3,848,436	-				-1.7
3,848,514	-				+0.4
3,848,539	+				-0.2
3,848,540	-				-1.0
3,848,686	+		ABIE41_RS18690	0.45	+0.6
3,848,782	-				-1.4
3,848,811	+				-0.3
3,848,812	-				-0.2
3,848,812	-				+0.5
3,848,812	-				+0.1
3,848,812	-				-1.7
3,848,812	-				-3.8
3,848,844	-				-0.5
3,848,884	+				-3.3
3,848,885	+				-2.3
3,848,886	-				+1.8
3,848,886	-				-1.2
3,848,886	-				+0.2
3,848,928	+				-2.2
3,848,928	+				-1.2
3,849,001	+		ABIE41_RS18695	0.11	+0.1
3,849,001	+		ABIE41_RS18695	0.11	+0.6
3,849,001	+		ABIE41_RS18695	0.11	-0.1
3,849,001	+		ABIE41_RS18695	0.11	+0.2
3,849,001	+		ABIE41_RS18695	0.11	+0.3
3,849,002	-		ABIE41_RS18695	0.11	-0.3
3,849,002	-		ABIE41_RS18695	0.11	-0.4
3,849,002	-		ABIE41_RS18695	0.11	-0.3
3,849,002	-		ABIE41_RS18695	0.11	-0.1
3,849,017	+		ABIE41_RS18695	0.12	+0.6
3,849,241	+		ABIE41_RS18695	0.28	-2.5
3,849,241	+		ABIE41_RS18695	0.28	-0.4
3,849,241	+		ABIE41_RS18695	0.28	+0.4
3,849,242	-		ABIE41_RS18695	0.28	+1.1
3,849,242	-		ABIE41_RS18695	0.28	-2.1
3,849,566	+		ABIE41_RS18695	0.51	-2.7
3,849,706	+		ABIE41_RS18695	0.61	-1.1
3,849,707	-		ABIE41_RS18695	0.61	-3.6