Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18185

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,744,077	+				+0.3
3,744,077	+				+0.6
3,744,077	+				-1.5
3,744,078	-				+0.3
3,744,597	+		ABIE41_RS18185	0.10	-1.0
3,744,597	+		ABIE41_RS18185	0.10	+1.0
3,744,598	-		ABIE41_RS18185	0.11	+0.4
3,744,598	-		ABIE41_RS18185	0.11	+1.5
3,744,598	-		ABIE41_RS18185	0.11	-0.8
3,744,598	-		ABIE41_RS18185	0.11	-0.5
3,744,598	-		ABIE41_RS18185	0.11	+0.4
3,744,598	-		ABIE41_RS18185	0.11	+0.5
3,744,690	+		ABIE41_RS18185	0.17	+0.1
3,744,691	-		ABIE41_RS18185	0.18	+0.1
3,744,691	-		ABIE41_RS18185	0.18	-0.2
3,744,691	-		ABIE41_RS18185	0.18	-1.4
3,744,691	-		ABIE41_RS18185	0.18	-0.9
3,744,705	+		ABIE41_RS18185	0.19	+0.1
3,744,705	+		ABIE41_RS18185	0.19	-2.2
3,744,706	-		ABIE41_RS18185	0.19	-1.0
3,744,706	-		ABIE41_RS18185	0.19	-0.1
3,744,789	+		ABIE41_RS18185	0.25	-1.9
3,744,789	+		ABIE41_RS18185	0.25	+0.3
3,744,789	+		ABIE41_RS18185	0.25	-0.3
3,744,790	-		ABIE41_RS18185	0.25	+0.7
3,744,790	-		ABIE41_RS18185	0.25	-0.5
3,744,790	-		ABIE41_RS18185	0.25	-0.2
3,745,740	-				-0.5
3,745,740	-				-0.4
3,745,762	+				+1.4
3,745,844	+		ABIE41_RS18190	0.13	+0.7
3,745,845	-		ABIE41_RS18190	0.13	+0.0
3,745,866	-		ABIE41_RS18190	0.15	-0.7
3,745,866	-		ABIE41_RS18190	0.15	+0.0
3,745,901	+		ABIE41_RS18190	0.19	-1.3
3,746,039	+		ABIE41_RS18190	0.36	+0.4
3,746,039	+		ABIE41_RS18190	0.36	-0.6
3,746,040	-		ABIE41_RS18190	0.36	+2.0
3,746,040	-		ABIE41_RS18190	0.36	-1.1
3,746,357	+		ABIE41_RS18190	0.74	-1.9
3,746,357	+		ABIE41_RS18190	0.74	-0.7
3,746,453	+		ABIE41_RS18190	0.85	+1.3
3,746,453	+		ABIE41_RS18190	0.85	-0.3
3,746,453	+		ABIE41_RS18190	0.85	-0.5
3,746,453	+		ABIE41_RS18190	0.85	-0.3
3,746,453	+		ABIE41_RS18190	0.85	-0.3
3,746,454	-		ABIE41_RS18190	0.86	-1.2
3,746,611	-				+1.8