Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16400

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16395 and ABIE41_RS16400 are separated by 11 nucleotidesABIE41_RS16400 and ABIE41_RS16405 are separated by 63 nucleotides ABIE41_RS16395: ABIE41_RS16395 - TRAP transporter large permease, at 3,371,566 to 3,372,849 _RS16395 ABIE41_RS16400: ABIE41_RS16400 - TRAP transporter small permease, at 3,372,861 to 3,373,376 _RS16400 ABIE41_RS16405: ABIE41_RS16405 - TRAP transporter substrate-binding protein, at 3,373,440 to 3,374,435 _RS16405 Position (kb) 3372 3373 3374Strain fitness (log2 ratio) -2 -1 0 1 2at 3372.107 kb on + strand, within ABIE41_RS16395at 3372.107 kb on + strand, within ABIE41_RS16395at 3372.107 kb on + strand, within ABIE41_RS16395at 3372.108 kb on - strand, within ABIE41_RS16395at 3372.108 kb on - strand, within ABIE41_RS16395at 3372.108 kb on - strand, within ABIE41_RS16395at 3372.254 kb on + strand, within ABIE41_RS16395at 3372.255 kb on - strand, within ABIE41_RS16395at 3372.278 kb on + strand, within ABIE41_RS16395at 3372.278 kb on + strand, within ABIE41_RS16395at 3372.278 kb on + strand, within ABIE41_RS16395at 3372.278 kb on + strand, within ABIE41_RS16395at 3372.278 kb on + strand, within ABIE41_RS16395at 3372.278 kb on + strand, within ABIE41_RS16395at 3372.279 kb on - strand, within ABIE41_RS16395at 3372.279 kb on - strand, within ABIE41_RS16395at 3372.279 kb on - strand, within ABIE41_RS16395at 3372.377 kb on + strand, within ABIE41_RS16395at 3372.377 kb on + strand, within ABIE41_RS16395at 3372.377 kb on + strand, within ABIE41_RS16395at 3372.377 kb on + strand, within ABIE41_RS16395at 3372.377 kb on + strand, within ABIE41_RS16395at 3372.377 kb on + strand, within ABIE41_RS16395at 3372.378 kb on - strand, within ABIE41_RS16395at 3372.378 kb on - strand, within ABIE41_RS16395at 3372.378 kb on - strand, within ABIE41_RS16395at 3372.449 kb on + strand, within ABIE41_RS16395at 3372.450 kb on - strand, within ABIE41_RS16395at 3372.461 kb on + strand, within ABIE41_RS16395at 3372.461 kb on + strand, within ABIE41_RS16395at 3372.692 kb on + strand, within ABIE41_RS16395at 3372.693 kb on - strand, within ABIE41_RS16395at 3372.961 kb on + strand, within ABIE41_RS16400at 3372.961 kb on + strand, within ABIE41_RS16400at 3372.962 kb on - strand, within ABIE41_RS16400at 3372.962 kb on - strand, within ABIE41_RS16400at 3372.962 kb on - strand, within ABIE41_RS16400at 3372.962 kb on - strand, within ABIE41_RS16400at 3373.156 kb on + strand, within ABIE41_RS16400at 3373.156 kb on + strand, within ABIE41_RS16400at 3373.700 kb on + strand, within ABIE41_RS16405at 3373.700 kb on + strand, within ABIE41_RS16405at 3373.700 kb on + strand, within ABIE41_RS16405at 3373.701 kb on - strand, within ABIE41_RS16405at 3373.701 kb on - strand, within ABIE41_RS16405at 3374.083 kb on + strand, within ABIE41_RS16405at 3374.083 kb on + strand, within ABIE41_RS16405at 3374.084 kb on - strand, within ABIE41_RS16405at 3374.084 kb on - strand, within ABIE41_RS16405at 3374.089 kb on + strand, within ABIE41_RS16405at 3374.089 kb on + strand, within ABIE41_RS16405at 3374.090 kb on - strand, within ABIE41_RS16405at 3374.094 kb on - strand, within ABIE41_RS16405at 3374.094 kb on - strand, within ABIE41_RS16405at 3374.094 kb on - strand, within ABIE41_RS16405at 3374.094 kb on - strand, within ABIE41_RS16405at 3374.113 kb on + strand, within ABIE41_RS16405at 3374.114 kb on - strand, within ABIE41_RS16405at 3374.114 kb on - strand, within ABIE41_RS16405at 3374.114 kb on - strand, within ABIE41_RS16405

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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3,372,107 + ABIE41_RS16395 0.42 -0.9
3,372,107 + ABIE41_RS16395 0.42 -0.3
3,372,107 + ABIE41_RS16395 0.42 -0.7
3,372,108 - ABIE41_RS16395 0.42 -1.2
3,372,108 - ABIE41_RS16395 0.42 -0.4
3,372,108 - ABIE41_RS16395 0.42 +0.1
3,372,254 + ABIE41_RS16395 0.54 +0.5
3,372,255 - ABIE41_RS16395 0.54 +0.9
3,372,278 + ABIE41_RS16395 0.55 +0.4
3,372,278 + ABIE41_RS16395 0.55 +0.6
3,372,278 + ABIE41_RS16395 0.55 -0.2
3,372,278 + ABIE41_RS16395 0.55 -0.3
3,372,278 + ABIE41_RS16395 0.55 +0.2
3,372,278 + ABIE41_RS16395 0.55 +0.4
3,372,279 - ABIE41_RS16395 0.56 -0.9
3,372,279 - ABIE41_RS16395 0.56 +1.0
3,372,279 - ABIE41_RS16395 0.56 -0.7
3,372,377 + ABIE41_RS16395 0.63 +0.7
3,372,377 + ABIE41_RS16395 0.63 -1.1
3,372,377 + ABIE41_RS16395 0.63 -1.8
3,372,377 + ABIE41_RS16395 0.63 +0.3
3,372,377 + ABIE41_RS16395 0.63 +2.3
3,372,377 + ABIE41_RS16395 0.63 +1.2
3,372,378 - ABIE41_RS16395 0.63 -0.2
3,372,378 - ABIE41_RS16395 0.63 +0.2
3,372,378 - ABIE41_RS16395 0.63 +0.4
3,372,449 + ABIE41_RS16395 0.69 +0.5
3,372,450 - ABIE41_RS16395 0.69 -2.1
3,372,461 + ABIE41_RS16395 0.70 +0.1
3,372,461 + ABIE41_RS16395 0.70 +0.4
3,372,692 + ABIE41_RS16395 0.88 +0.2
3,372,693 - ABIE41_RS16395 0.88 -2.2
3,372,961 + ABIE41_RS16400 0.19 -0.1
3,372,961 + ABIE41_RS16400 0.19 -0.8
3,372,962 - ABIE41_RS16400 0.20 +0.1
3,372,962 - ABIE41_RS16400 0.20 +0.7
3,372,962 - ABIE41_RS16400 0.20 -0.1
3,372,962 - ABIE41_RS16400 0.20 +0.7
3,373,156 + ABIE41_RS16400 0.57 -0.2
3,373,156 + ABIE41_RS16400 0.57 -0.9
3,373,700 + ABIE41_RS16405 0.26 +0.7
3,373,700 + ABIE41_RS16405 0.26 -0.2
3,373,700 + ABIE41_RS16405 0.26 -0.1
3,373,701 - ABIE41_RS16405 0.26 -1.3
3,373,701 - ABIE41_RS16405 0.26 -0.2
3,374,083 + ABIE41_RS16405 0.65 -0.6
3,374,083 + ABIE41_RS16405 0.65 +0.2
3,374,084 - ABIE41_RS16405 0.65 -0.7
3,374,084 - ABIE41_RS16405 0.65 +0.1
3,374,089 + ABIE41_RS16405 0.65 -1.3
3,374,089 + ABIE41_RS16405 0.65 -0.9
3,374,090 - ABIE41_RS16405 0.65 +0.1
3,374,094 - ABIE41_RS16405 0.66 -1.3
3,374,094 - ABIE41_RS16405 0.66 +0.0
3,374,094 - ABIE41_RS16405 0.66 -1.5
3,374,094 - ABIE41_RS16405 0.66 +0.2
3,374,113 + ABIE41_RS16405 0.68 +0.7
3,374,114 - ABIE41_RS16405 0.68 +0.2
3,374,114 - ABIE41_RS16405 0.68 -0.4
3,374,114 - ABIE41_RS16405 0.68 +0.3

Or see this region's nucleotide sequence