Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15765

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,228,040	+		ABIE41_RS15755	0.59	-0.1
3,228,040	+		ABIE41_RS15755	0.59	-0.2
3,228,040	+		ABIE41_RS15755	0.59	-0.9
3,228,041	-		ABIE41_RS15755	0.59	-0.0
3,228,041	-		ABIE41_RS15755	0.59	+0.3
3,228,130	+		ABIE41_RS15755	0.68	+1.5
3,228,146	+		ABIE41_RS15755	0.70	+0.4
3,228,147	-		ABIE41_RS15755	0.70	-0.0
3,228,200	+		ABIE41_RS15755	0.76	+0.4
3,228,284	+		ABIE41_RS15755	0.84	+0.3
3,228,284	+		ABIE41_RS15755	0.84	-0.5
3,228,304	+		ABIE41_RS15755	0.86	-0.3
3,228,339	+				-0.2
3,228,339	+				+0.1
3,228,340	-				+0.6
3,228,340	-				+0.2
3,228,340	-				-0.4
3,228,340	-				+0.2
3,228,340	-				+0.2
3,228,645	+				+0.1
3,228,680	+		ABIE41_RS15760	0.18	-0.1
3,228,691	-		ABIE41_RS15760	0.21	+0.6
3,228,691	-		ABIE41_RS15760	0.21	+0.5
3,229,258	+		ABIE41_RS15765	0.38	-1.1
3,229,258	+		ABIE41_RS15765	0.38	-1.9
3,229,258	+		ABIE41_RS15765	0.38	-2.4
3,229,258	+		ABIE41_RS15765	0.38	-0.6
3,229,259	-		ABIE41_RS15765	0.38	-1.1
3,229,477	+		ABIE41_RS15765	0.73	+0.6
3,229,477	+		ABIE41_RS15765	0.73	+0.3
3,229,478	-		ABIE41_RS15765	0.73	-1.1
3,229,622	-				-2.1
3,229,622	-				-0.2
3,229,736	+				+0.5
3,229,736	+				+0.2
3,229,736	+				+0.2
3,229,737	-				+1.7
3,229,737	-				-1.1
3,229,757	+				+1.0
3,229,995	-		ABIE41_RS15770	0.30	-0.2
3,229,995	-		ABIE41_RS15770	0.30	+0.3
3,230,216	+		ABIE41_RS15770	0.49	+0.6
3,230,216	+		ABIE41_RS15770	0.49	+0.1
3,230,345	+		ABIE41_RS15770	0.60	-0.1
3,230,346	-		ABIE41_RS15770	0.60	+0.3
3,230,376	-		ABIE41_RS15770	0.62	+0.9
3,230,565	-		ABIE41_RS15770	0.79	-1.7