Strain Fitness in Bosea sp. OAE506 around ABIE41_RS14795

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS14790 and ABIE41_RS14795 are separated by 75 nucleotidesABIE41_RS14795 and ABIE41_RS14800 are separated by 187 nucleotidesABIE41_RS14800 and ABIE41_RS14805 are separated by 97 nucleotidesABIE41_RS14805 and ABIE41_RS14810 are separated by 121 nucleotides ABIE41_RS14790: ABIE41_RS14790 - GH25 family lysozyme, at 3,023,760 to 3,024,686 _RS14790 ABIE41_RS14795: ABIE41_RS14795 - magnesium transporter, at 3,024,762 to 3,026,168 _RS14795 ABIE41_RS14800: ABIE41_RS14800 - tRNA-Leu, at 3,026,356 to 3,026,440 _RS14800 ABIE41_RS14805: ABIE41_RS14805 - FliM/FliN family flagellar motor switch protein, at 3,026,538 to 3,026,807 _RS14805 ABIE41_RS14810: ABIE41_RS14810 - lipoyl(octanoyl) transferase LipB, at 3,026,929 to 3,027,624 _RS14810 Position (kb) 3024 3025 3026 3027Strain fitness (log2 ratio) -2 -1 0 1 2at 3024.103 kb on + strand, within ABIE41_RS14790at 3024.154 kb on + strand, within ABIE41_RS14790at 3024.155 kb on - strand, within ABIE41_RS14790at 3024.361 kb on + strand, within ABIE41_RS14790at 3024.361 kb on + strand, within ABIE41_RS14790at 3024.362 kb on - strand, within ABIE41_RS14790at 3024.373 kb on + strand, within ABIE41_RS14790at 3024.374 kb on - strand, within ABIE41_RS14790at 3024.374 kb on - strand, within ABIE41_RS14790at 3024.374 kb on - strand, within ABIE41_RS14790at 3024.739 kb on + strandat 3024.739 kb on + strandat 3024.769 kb on + strandat 3024.769 kb on + strandat 3024.770 kb on - strandat 3025.438 kb on + strand, within ABIE41_RS14795at 3025.438 kb on + strand, within ABIE41_RS14795at 3025.438 kb on + strand, within ABIE41_RS14795at 3025.439 kb on - strand, within ABIE41_RS14795at 3025.439 kb on - strand, within ABIE41_RS14795at 3025.819 kb on + strand, within ABIE41_RS14795at 3025.819 kb on + strand, within ABIE41_RS14795at 3025.819 kb on + strand, within ABIE41_RS14795at 3025.819 kb on + strand, within ABIE41_RS14795at 3025.820 kb on - strand, within ABIE41_RS14795at 3025.820 kb on - strand, within ABIE41_RS14795at 3025.820 kb on - strand, within ABIE41_RS14795at 3026.569 kb on + strand, within ABIE41_RS14805at 3026.569 kb on + strand, within ABIE41_RS14805at 3026.570 kb on - strand, within ABIE41_RS14805at 3026.738 kb on - strand, within ABIE41_RS14805at 3026.738 kb on - strand, within ABIE41_RS14805at 3026.738 kb on - strand, within ABIE41_RS14805at 3026.738 kb on - strand, within ABIE41_RS14805at 3026.738 kb on - strand, within ABIE41_RS14805at 3026.826 kb on + strandat 3026.826 kb on + strandat 3026.826 kb on + strandat 3026.827 kb on - strandat 3026.827 kb on - strandat 3026.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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3,024,103 + ABIE41_RS14790 0.37 -1.3
3,024,154 + ABIE41_RS14790 0.43 +1.8
3,024,155 - ABIE41_RS14790 0.43 +1.1
3,024,361 + ABIE41_RS14790 0.65 -0.2
3,024,361 + ABIE41_RS14790 0.65 -2.3
3,024,362 - ABIE41_RS14790 0.65 +0.5
3,024,373 + ABIE41_RS14790 0.66 +0.2
3,024,374 - ABIE41_RS14790 0.66 -0.2
3,024,374 - ABIE41_RS14790 0.66 +0.0
3,024,374 - ABIE41_RS14790 0.66 +0.7
3,024,739 + +0.2
3,024,739 + +0.2
3,024,769 + -1.8
3,024,769 + +2.2
3,024,770 - -1.2
3,025,438 + ABIE41_RS14795 0.48 -0.3
3,025,438 + ABIE41_RS14795 0.48 +0.5
3,025,438 + ABIE41_RS14795 0.48 +1.8
3,025,439 - ABIE41_RS14795 0.48 -1.5
3,025,439 - ABIE41_RS14795 0.48 -1.7
3,025,819 + ABIE41_RS14795 0.75 +0.1
3,025,819 + ABIE41_RS14795 0.75 -0.4
3,025,819 + ABIE41_RS14795 0.75 +0.8
3,025,819 + ABIE41_RS14795 0.75 +0.5
3,025,820 - ABIE41_RS14795 0.75 +0.7
3,025,820 - ABIE41_RS14795 0.75 +2.7
3,025,820 - ABIE41_RS14795 0.75 +0.5
3,026,569 + ABIE41_RS14805 0.11 -2.3
3,026,569 + ABIE41_RS14805 0.11 +0.5
3,026,570 - ABIE41_RS14805 0.12 +0.3
3,026,738 - ABIE41_RS14805 0.74 +0.2
3,026,738 - ABIE41_RS14805 0.74 -0.3
3,026,738 - ABIE41_RS14805 0.74 +0.0
3,026,738 - ABIE41_RS14805 0.74 +1.2
3,026,738 - ABIE41_RS14805 0.74 +1.5
3,026,826 + +0.8
3,026,826 + +0.7
3,026,826 + +0.5
3,026,827 - -1.9
3,026,827 - -1.8
3,026,827 - -0.7

Or see this region's nucleotide sequence