Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14790 and ABIE41_RS14795 are separated by 75 nucleotides ABIE41_RS14795 and ABIE41_RS14800 are separated by 187 nucleotides ABIE41_RS14800 and ABIE41_RS14805 are separated by 97 nucleotides ABIE41_RS14805 and ABIE41_RS14810 are separated by 121 nucleotides
ABIE41_RS14790: ABIE41_RS14790 - GH25 family lysozyme, at 3,023,760 to 3,024,686
_RS14790
ABIE41_RS14795: ABIE41_RS14795 - magnesium transporter, at 3,024,762 to 3,026,168
_RS14795
ABIE41_RS14800: ABIE41_RS14800 - tRNA-Leu, at 3,026,356 to 3,026,440
_RS14800
ABIE41_RS14805: ABIE41_RS14805 - FliM/FliN family flagellar motor switch protein, at 3,026,538 to 3,026,807
_RS14805
ABIE41_RS14810: ABIE41_RS14810 - lipoyl(octanoyl) transferase LipB, at 3,026,929 to 3,027,624
_RS14810
Position (kb)
3024
3025
3026
3027 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3024.103 kb on + strand, within ABIE41_RS14790 at 3024.154 kb on + strand, within ABIE41_RS14790 at 3024.155 kb on - strand, within ABIE41_RS14790 at 3024.361 kb on + strand, within ABIE41_RS14790 at 3024.361 kb on + strand, within ABIE41_RS14790 at 3024.362 kb on - strand, within ABIE41_RS14790 at 3024.373 kb on + strand, within ABIE41_RS14790 at 3024.374 kb on - strand, within ABIE41_RS14790 at 3024.374 kb on - strand, within ABIE41_RS14790 at 3024.374 kb on - strand, within ABIE41_RS14790 at 3024.739 kb on + strand at 3024.739 kb on + strand at 3024.769 kb on + strand at 3024.769 kb on + strand at 3024.770 kb on - strand at 3025.438 kb on + strand, within ABIE41_RS14795 at 3025.438 kb on + strand, within ABIE41_RS14795 at 3025.438 kb on + strand, within ABIE41_RS14795 at 3025.439 kb on - strand, within ABIE41_RS14795 at 3025.439 kb on - strand, within ABIE41_RS14795 at 3025.819 kb on + strand, within ABIE41_RS14795 at 3025.819 kb on + strand, within ABIE41_RS14795 at 3025.819 kb on + strand, within ABIE41_RS14795 at 3025.819 kb on + strand, within ABIE41_RS14795 at 3025.820 kb on - strand, within ABIE41_RS14795 at 3025.820 kb on - strand, within ABIE41_RS14795 at 3025.820 kb on - strand, within ABIE41_RS14795 at 3026.569 kb on + strand, within ABIE41_RS14805 at 3026.569 kb on + strand, within ABIE41_RS14805 at 3026.570 kb on - strand, within ABIE41_RS14805 at 3026.738 kb on - strand, within ABIE41_RS14805 at 3026.738 kb on - strand, within ABIE41_RS14805 at 3026.738 kb on - strand, within ABIE41_RS14805 at 3026.738 kb on - strand, within ABIE41_RS14805 at 3026.738 kb on - strand, within ABIE41_RS14805 at 3026.826 kb on + strand at 3026.826 kb on + strand at 3026.826 kb on + strand at 3026.827 kb on - strand at 3026.827 kb on - strand at 3026.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 3,024,103 + ABIE41_RS14790 0.37 -1.3 3,024,154 + ABIE41_RS14790 0.43 +1.8 3,024,155 - ABIE41_RS14790 0.43 +1.1 3,024,361 + ABIE41_RS14790 0.65 -0.2 3,024,361 + ABIE41_RS14790 0.65 -2.3 3,024,362 - ABIE41_RS14790 0.65 +0.5 3,024,373 + ABIE41_RS14790 0.66 +0.2 3,024,374 - ABIE41_RS14790 0.66 -0.2 3,024,374 - ABIE41_RS14790 0.66 +0.0 3,024,374 - ABIE41_RS14790 0.66 +0.7 3,024,739 + +0.2 3,024,739 + +0.2 3,024,769 + -1.8 3,024,769 + +2.2 3,024,770 - -1.2 3,025,438 + ABIE41_RS14795 0.48 -0.3 3,025,438 + ABIE41_RS14795 0.48 +0.5 3,025,438 + ABIE41_RS14795 0.48 +1.8 3,025,439 - ABIE41_RS14795 0.48 -1.5 3,025,439 - ABIE41_RS14795 0.48 -1.7 3,025,819 + ABIE41_RS14795 0.75 +0.1 3,025,819 + ABIE41_RS14795 0.75 -0.4 3,025,819 + ABIE41_RS14795 0.75 +0.8 3,025,819 + ABIE41_RS14795 0.75 +0.5 3,025,820 - ABIE41_RS14795 0.75 +0.7 3,025,820 - ABIE41_RS14795 0.75 +2.7 3,025,820 - ABIE41_RS14795 0.75 +0.5 3,026,569 + ABIE41_RS14805 0.11 -2.3 3,026,569 + ABIE41_RS14805 0.11 +0.5 3,026,570 - ABIE41_RS14805 0.12 +0.3 3,026,738 - ABIE41_RS14805 0.74 +0.2 3,026,738 - ABIE41_RS14805 0.74 -0.3 3,026,738 - ABIE41_RS14805 0.74 +0.0 3,026,738 - ABIE41_RS14805 0.74 +1.2 3,026,738 - ABIE41_RS14805 0.74 +1.5 3,026,826 + +0.8 3,026,826 + +0.7 3,026,826 + +0.5 3,026,827 - -1.9 3,026,827 - -1.8 3,026,827 - -0.7
Or see this region's nucleotide sequence