Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12230

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,500,903	+		ABIE41_RS12215	0.66	+0.0
2,500,904	-		ABIE41_RS12215	0.66	-0.1
2,500,904	-		ABIE41_RS12215	0.66	-2.6
2,500,904	-		ABIE41_RS12215	0.66	+0.5
2,500,925	-		ABIE41_RS12215	0.69	-0.3
2,501,014	+		ABIE41_RS12215	0.82	+0.2
2,501,014	+		ABIE41_RS12215	0.82	-0.0
2,501,014	+		ABIE41_RS12215	0.82	-0.3
2,501,015	-		ABIE41_RS12215	0.82	-0.3
2,501,015	-		ABIE41_RS12215	0.82	-2.4
2,501,015	-		ABIE41_RS12215	0.82	-0.3
2,501,122	+				+1.4
2,501,123	-				-1.5
2,501,363	+		ABIE41_RS12220	0.49	+0.6
2,501,364	-		ABIE41_RS12220	0.49	-1.7
2,501,380	-		ABIE41_RS12220	0.53	+2.3
2,501,470	+		ABIE41_RS12220	0.74	-1.2
2,501,512	+		ABIE41_RS12220	0.83	-1.9
2,501,512	+		ABIE41_RS12220	0.83	-0.6
2,501,513	-		ABIE41_RS12220	0.84	+0.2
2,501,579	+				+1.0
2,501,579	+				-0.4
2,501,580	-				-0.6
2,501,580	-				-0.7
2,501,628	-		ABIE41_RS12225	0.19	-0.5
2,501,676	+		ABIE41_RS12225	0.38	-0.8
2,501,696	-		ABIE41_RS12225	0.47	-0.5
2,501,709	+		ABIE41_RS12225	0.52	-1.3
2,501,846	-				+0.1
2,501,857	+				+1.1
2,501,858	-				-0.6
2,501,858	-				-1.3
2,502,513	+		ABIE41_RS12230	0.34	+0.1
2,502,514	-		ABIE41_RS12230	0.34	-0.3
2,502,514	-		ABIE41_RS12230	0.34	-1.1
2,502,515	+		ABIE41_RS12230	0.34	-0.3
2,502,515	+		ABIE41_RS12230	0.34	+0.8
2,502,516	-		ABIE41_RS12230	0.35	+0.5
2,502,516	-		ABIE41_RS12230	0.35	+0.3
2,502,797	+		ABIE41_RS12230	0.50	-1.3
2,502,798	-		ABIE41_RS12230	0.50	+1.5
2,502,818	+		ABIE41_RS12230	0.51	-0.6
2,502,831	+		ABIE41_RS12230	0.52	-0.3
2,503,616	+				-0.2
2,503,616	+				-1.8
2,503,617	-				+0.5
2,503,617	-				-0.3
2,503,617	-				+1.0
2,504,374	+		ABIE41_RS12235	0.57	+1.4
2,504,375	-		ABIE41_RS12235	0.57	+0.7
2,504,375	-		ABIE41_RS12235	0.57	-1.0
2,504,527	+		ABIE41_RS12235	0.81	-3.0
2,504,527	+		ABIE41_RS12235	0.81	+0.1
2,504,528	-		ABIE41_RS12235	0.81	-1.0
2,504,528	-		ABIE41_RS12235	0.81	-0.5
2,504,528	-		ABIE41_RS12235	0.81	-0.4
2,504,528	-		ABIE41_RS12235	0.81	+0.7
2,504,528	-		ABIE41_RS12235	0.81	-3.5
2,504,528	-		ABIE41_RS12235	0.81	-0.2