Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11285

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,319,620	+				+1.7
2,319,621	-				-0.1
2,319,621	-				-1.7
2,319,640	-				-0.2
2,319,817	+		ABIE41_RS11280	0.11	+0.8
2,319,818	-		ABIE41_RS11280	0.11	+0.5
2,319,820	-		ABIE41_RS11280	0.11	+0.5
2,320,030	+		ABIE41_RS11280	0.35	+0.2
2,320,030	+		ABIE41_RS11280	0.35	+0.1
2,320,031	-		ABIE41_RS11280	0.35	-0.0
2,320,031	-		ABIE41_RS11280	0.35	-1.2
2,320,063	+		ABIE41_RS11280	0.38	+1.8
2,320,064	-		ABIE41_RS11280	0.38	-0.3
2,320,064	-		ABIE41_RS11280	0.38	+0.7
2,320,246	+		ABIE41_RS11280	0.59	+0.5
2,320,246	+		ABIE41_RS11280	0.59	-0.4
2,320,246	+		ABIE41_RS11280	0.59	-0.1
2,320,246	+		ABIE41_RS11280	0.59	+0.8
2,320,247	-		ABIE41_RS11280	0.59	-1.3
2,320,247	-		ABIE41_RS11280	0.59	-1.3
2,320,453	-		ABIE41_RS11280	0.82	-0.3
2,320,453	-		ABIE41_RS11280	0.82	+0.9
2,320,573	+				+0.2
2,320,573	+				-0.3
2,320,574	-				+0.6
2,320,576	+				+0.4
2,320,576	+				+1.7
2,320,577	-				+1.0
2,320,577	-				-1.5
2,321,383	-		ABIE41_RS11285	0.66	-0.3
2,321,460	+		ABIE41_RS11285	0.73	-0.0
2,321,460	+		ABIE41_RS11285	0.73	+0.4
2,321,460	+		ABIE41_RS11285	0.73	+0.9
2,321,460	+		ABIE41_RS11285	0.73	-1.3
2,321,460	+		ABIE41_RS11285	0.73	+0.0
2,321,461	-		ABIE41_RS11285	0.73	-0.2
2,321,461	-		ABIE41_RS11285	0.73	+0.9
2,321,461	-		ABIE41_RS11285	0.73	+0.4
2,321,516	+		ABIE41_RS11285	0.78	+1.1
2,321,563	-		ABIE41_RS11285	0.82	-2.3
2,321,703	+				-0.7
2,321,704	-				-3.0
2,321,704	-				+2.7
2,321,704	-				-1.2
2,321,704	-				+1.0
2,321,837	+				-0.7
2,321,837	+				-2.3
2,321,837	+				-0.2
2,321,837	+				+1.5
2,321,838	-				+0.4
2,322,054	+		ABIE41_RS11290	0.14	-0.9
2,322,055	-		ABIE41_RS11290	0.14	-0.4
2,322,055	-		ABIE41_RS11290	0.14	+0.7
2,322,435	+		ABIE41_RS11290	0.52	+0.7
2,322,435	+		ABIE41_RS11290	0.52	-1.2
2,322,436	-		ABIE41_RS11290	0.52	-0.0
2,322,436	-		ABIE41_RS11290	0.52	-1.0