Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11280

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,318,761	+		ABIE41_RS11275	0.24	-0.3
2,318,761	+		ABIE41_RS11275	0.24	-0.4
2,318,762	-		ABIE41_RS11275	0.24	+0.2
2,318,818	+		ABIE41_RS11275	0.29	+1.5
2,318,818	+		ABIE41_RS11275	0.29	+0.5
2,318,819	-		ABIE41_RS11275	0.29	+0.3
2,318,819	-		ABIE41_RS11275	0.29	+0.0
2,318,896	+		ABIE41_RS11275	0.36	-0.2
2,318,896	+		ABIE41_RS11275	0.36	-3.0
2,318,896	+		ABIE41_RS11275	0.36	+0.4
2,318,897	-		ABIE41_RS11275	0.37	+0.2
2,318,899	+		ABIE41_RS11275	0.37	+0.8
2,318,899	+		ABIE41_RS11275	0.37	-0.8
2,318,900	-		ABIE41_RS11275	0.37	+1.0
2,318,902	+		ABIE41_RS11275	0.37	-0.1
2,318,902	+		ABIE41_RS11275	0.37	+1.3
2,318,902	+		ABIE41_RS11275	0.37	-0.4
2,318,902	+		ABIE41_RS11275	0.37	+0.1
2,318,902	+		ABIE41_RS11275	0.37	+0.5
2,318,903	-		ABIE41_RS11275	0.37	-1.0
2,318,995	+		ABIE41_RS11275	0.45	-0.1
2,318,996	-		ABIE41_RS11275	0.46	-0.0
2,319,163	+		ABIE41_RS11275	0.61	-1.5
2,319,164	-		ABIE41_RS11275	0.61	-1.4
2,319,164	-		ABIE41_RS11275	0.61	-0.2
2,319,164	-		ABIE41_RS11275	0.61	-1.0
2,319,181	+		ABIE41_RS11275	0.62	-0.4
2,319,181	+		ABIE41_RS11275	0.62	-1.9
2,319,298	+		ABIE41_RS11275	0.73	+0.7
2,319,298	+		ABIE41_RS11275	0.73	-1.5
2,319,299	-		ABIE41_RS11275	0.73	+0.1
2,319,304	+		ABIE41_RS11275	0.74	+0.1
2,319,304	+		ABIE41_RS11275	0.74	-0.4
2,319,457	+		ABIE41_RS11275	0.88	-0.2
2,319,457	+		ABIE41_RS11275	0.88	-0.7
2,319,620	+				+1.7
2,319,621	-				-0.1
2,319,621	-				-1.7
2,319,640	-				-0.2
2,319,817	+		ABIE41_RS11280	0.11	+0.8
2,319,818	-		ABIE41_RS11280	0.11	+0.5
2,319,820	-		ABIE41_RS11280	0.11	+0.5
2,320,030	+		ABIE41_RS11280	0.35	+0.2
2,320,030	+		ABIE41_RS11280	0.35	+0.1
2,320,031	-		ABIE41_RS11280	0.35	-0.0
2,320,031	-		ABIE41_RS11280	0.35	-1.2
2,320,063	+		ABIE41_RS11280	0.38	+1.8
2,320,064	-		ABIE41_RS11280	0.38	-0.3
2,320,064	-		ABIE41_RS11280	0.38	+0.7
2,320,246	+		ABIE41_RS11280	0.59	+0.5
2,320,246	+		ABIE41_RS11280	0.59	-0.4
2,320,246	+		ABIE41_RS11280	0.59	-0.1
2,320,246	+		ABIE41_RS11280	0.59	+0.8
2,320,247	-		ABIE41_RS11280	0.59	-1.3
2,320,247	-		ABIE41_RS11280	0.59	-1.3
2,320,453	-		ABIE41_RS11280	0.82	-0.3
2,320,453	-		ABIE41_RS11280	0.82	+0.9
2,320,573	+				+0.2
2,320,573	+				-0.3
2,320,574	-				+0.6
2,320,576	+				+0.4
2,320,576	+				+1.7
2,320,577	-				+1.0
2,320,577	-				-1.5
2,321,383	-		ABIE41_RS11285	0.66	-0.3
2,321,460	+		ABIE41_RS11285	0.73	-0.0
2,321,460	+		ABIE41_RS11285	0.73	+0.4
2,321,460	+		ABIE41_RS11285	0.73	+0.9
2,321,460	+		ABIE41_RS11285	0.73	-1.3
2,321,460	+		ABIE41_RS11285	0.73	+0.0
2,321,461	-		ABIE41_RS11285	0.73	-0.2
2,321,461	-		ABIE41_RS11285	0.73	+0.9
2,321,461	-		ABIE41_RS11285	0.73	+0.4
2,321,516	+		ABIE41_RS11285	0.78	+1.1
2,321,563	-		ABIE41_RS11285	0.82	-2.3