Strain Fitness in Bosea sp. OAE506 around ABIE41_RS10315

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
2,123,476	+		ABIE41_RS10310	0.78	-0.2
2,123,476	+		ABIE41_RS10310	0.78	+0.7
2,123,478	+		ABIE41_RS10310	0.78	-1.0
2,123,479	-		ABIE41_RS10310	0.78	+0.2
2,123,479	-		ABIE41_RS10310	0.78	-1.0
2,123,574	+		ABIE41_RS10310	0.81	-0.8
2,123,574	+		ABIE41_RS10310	0.81	+1.0
2,123,574	+		ABIE41_RS10310	0.81	-1.4
2,123,574	+		ABIE41_RS10310	0.81	+0.7
2,123,575	-		ABIE41_RS10310	0.81	-0.0
2,123,575	-		ABIE41_RS10310	0.81	-0.4
2,123,575	-		ABIE41_RS10310	0.81	+0.1
2,123,652	+		ABIE41_RS10310	0.83	+1.0
2,123,653	-		ABIE41_RS10310	0.83	-2.0
2,123,724	+		ABIE41_RS10310	0.85	+0.5
2,123,724	+		ABIE41_RS10310	0.85	+0.4
2,123,724	+		ABIE41_RS10310	0.85	+0.5
2,123,724	+		ABIE41_RS10310	0.85	-0.0
2,123,725	-		ABIE41_RS10310	0.85	-0.2
2,123,725	-		ABIE41_RS10310	0.85	+0.1
2,123,725	-		ABIE41_RS10310	0.85	+0.2
2,123,725	-		ABIE41_RS10310	0.85	+0.4
2,123,848	-		ABIE41_RS10310	0.88	-1.0
2,123,913	+				-0.4
2,123,913	+				+0.9
2,123,913	+				-0.3
2,123,913	+				+1.3
2,123,913	+				+1.0
2,123,914	-				-2.6
2,123,914	-				-1.7
2,123,914	-				-0.0
2,123,914	-				+0.5
2,124,043	-				+0.3
2,124,052	+				+0.3
2,124,053	-				-0.7
2,124,054	+				-0.0
2,124,054	+				-0.4
2,124,054	+				+0.6
2,124,054	+				-1.2
2,124,054	+				+0.1
2,124,054	+				-0.6
2,124,054	+				+0.9
2,124,054	+				+0.3
2,124,055	-				+1.5
2,124,055	-				-2.3
2,124,343	+				-2.8
2,124,343	+				-2.2
2,124,424	-				-1.7
2,124,570	+		ABIE41_RS10315	0.16	-0.1
2,124,571	-		ABIE41_RS10315	0.16	-1.0
2,124,604	-		ABIE41_RS10315	0.21	+2.4
2,124,645	+		ABIE41_RS10315	0.26	+0.6
2,124,646	-		ABIE41_RS10315	0.27	-0.9
2,124,671	-		ABIE41_RS10315	0.30	+2.0
2,124,690	+		ABIE41_RS10315	0.33	+0.0
2,124,690	+		ABIE41_RS10315	0.33	-2.3
2,124,691	-		ABIE41_RS10315	0.33	-1.7
2,124,700	-		ABIE41_RS10315	0.34	-0.4
2,124,780	+		ABIE41_RS10315	0.46	-0.3
2,124,781	-		ABIE41_RS10315	0.46	+0.1
2,124,966	+		ABIE41_RS10315	0.73	+0.4
2,124,967	-		ABIE41_RS10315	0.73	+0.6
2,124,967	-		ABIE41_RS10315	0.73	+0.2
2,125,057	-		ABIE41_RS10315	0.86	+0.3
2,125,218	+				+0.1
2,125,218	+				-0.2
2,125,218	+				-0.5
2,125,218	+				-2.2
2,125,219	-				-1.5
2,125,219	-				-2.2
2,125,319	+				+0.3
2,125,319	+				+0.1
2,125,320	-				+2.1
2,125,320	-				+1.5
2,125,320	-				+0.1
2,125,462	+				-0.2
2,125,462	+				-1.2
2,125,463	-				-1.1
2,125,463	-				+0.2
2,125,670	-		ABIE41_RS10320	0.14	-2.4
2,125,685	-		ABIE41_RS10320	0.14	-0.4
2,125,814	-		ABIE41_RS10320	0.20	+0.3
2,126,098	+		ABIE41_RS10320	0.32	-3.9
2,126,099	-		ABIE41_RS10320	0.32	+0.4
2,126,099	-		ABIE41_RS10320	0.32	-3.2
2,126,136	+		ABIE41_RS10320	0.34	-2.5