Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07765

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07760 and ABIE41_RS07765 are separated by 80 nucleotidesABIE41_RS07765 and ABIE41_RS07770 are separated by 7 nucleotides ABIE41_RS07760: ABIE41_RS07760 - tripartite tricarboxylate transporter substrate binding protein, at 1,592,535 to 1,593,530 _RS07760 ABIE41_RS07765: ABIE41_RS07765 - tripartite tricarboxylate transporter TctB family protein, at 1,593,611 to 1,594,102 _RS07765 ABIE41_RS07770: ABIE41_RS07770 - tripartite tricarboxylate transporter permease, at 1,594,110 to 1,595,615 _RS07770 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1592.889 kb on + strand, within ABIE41_RS07760at 1592.889 kb on + strand, within ABIE41_RS07760at 1592.889 kb on + strand, within ABIE41_RS07760at 1592.889 kb on + strand, within ABIE41_RS07760at 1592.889 kb on + strand, within ABIE41_RS07760at 1592.890 kb on - strand, within ABIE41_RS07760at 1592.890 kb on - strand, within ABIE41_RS07760at 1592.890 kb on - strand, within ABIE41_RS07760at 1592.890 kb on - strand, within ABIE41_RS07760at 1592.890 kb on - strand, within ABIE41_RS07760at 1592.952 kb on + strand, within ABIE41_RS07760at 1592.952 kb on + strand, within ABIE41_RS07760at 1592.952 kb on + strand, within ABIE41_RS07760at 1592.953 kb on - strand, within ABIE41_RS07760at 1592.953 kb on - strand, within ABIE41_RS07760at 1592.963 kb on + strand, within ABIE41_RS07760at 1592.963 kb on + strand, within ABIE41_RS07760at 1592.964 kb on - strand, within ABIE41_RS07760at 1592.964 kb on - strand, within ABIE41_RS07760at 1592.964 kb on - strand, within ABIE41_RS07760at 1592.964 kb on - strand, within ABIE41_RS07760at 1593.294 kb on + strand, within ABIE41_RS07760at 1593.294 kb on + strand, within ABIE41_RS07760at 1593.294 kb on + strand, within ABIE41_RS07760at 1593.295 kb on - strand, within ABIE41_RS07760at 1593.295 kb on - strand, within ABIE41_RS07760at 1593.295 kb on - strand, within ABIE41_RS07760at 1593.399 kb on + strand, within ABIE41_RS07760at 1593.399 kb on + strand, within ABIE41_RS07760at 1593.399 kb on + strand, within ABIE41_RS07760at 1593.400 kb on - strand, within ABIE41_RS07760at 1593.595 kb on + strandat 1593.596 kb on - strandat 1593.596 kb on - strandat 1593.596 kb on - strandat 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.674 kb on + strand, within ABIE41_RS07765at 1593.675 kb on - strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.909 kb on - strand, within ABIE41_RS07765at 1593.909 kb on - strand, within ABIE41_RS07765at 1593.909 kb on - strand, within ABIE41_RS07765at 1594.189 kb on - strandat 1594.189 kb on - strandat 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.395 kb on + strand, within ABIE41_RS07770at 1594.395 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.537 kb on - strand, within ABIE41_RS07770at 1594.537 kb on - strand, within ABIE41_RS07770at 1594.851 kb on + strand, within ABIE41_RS07770at 1594.852 kb on - strand, within ABIE41_RS07770at 1594.941 kb on + strand, within ABIE41_RS07770at 1594.941 kb on + strand, within ABIE41_RS07770at 1594.942 kb on - strand, within ABIE41_RS07770at 1594.942 kb on - strand, within ABIE41_RS07770at 1594.942 kb on - strand, within ABIE41_RS07770

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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1,592,889 + ABIE41_RS07760 0.36 +0.2
1,592,889 + ABIE41_RS07760 0.36 +0.3
1,592,889 + ABIE41_RS07760 0.36 +0.6
1,592,889 + ABIE41_RS07760 0.36 +0.2
1,592,889 + ABIE41_RS07760 0.36 +0.0
1,592,890 - ABIE41_RS07760 0.36 -0.6
1,592,890 - ABIE41_RS07760 0.36 -1.4
1,592,890 - ABIE41_RS07760 0.36 +1.8
1,592,890 - ABIE41_RS07760 0.36 +0.7
1,592,890 - ABIE41_RS07760 0.36 -0.6
1,592,952 + ABIE41_RS07760 0.42 +1.4
1,592,952 + ABIE41_RS07760 0.42 -0.5
1,592,952 + ABIE41_RS07760 0.42 -0.2
1,592,953 - ABIE41_RS07760 0.42 -1.9
1,592,953 - ABIE41_RS07760 0.42 +0.2
1,592,963 + ABIE41_RS07760 0.43 -0.3
1,592,963 + ABIE41_RS07760 0.43 +0.9
1,592,964 - ABIE41_RS07760 0.43 +0.0
1,592,964 - ABIE41_RS07760 0.43 -0.7
1,592,964 - ABIE41_RS07760 0.43 +0.1
1,592,964 - ABIE41_RS07760 0.43 -1.4
1,593,294 + ABIE41_RS07760 0.76 +0.9
1,593,294 + ABIE41_RS07760 0.76 -0.5
1,593,294 + ABIE41_RS07760 0.76 +1.1
1,593,295 - ABIE41_RS07760 0.76 -0.1
1,593,295 - ABIE41_RS07760 0.76 +0.2
1,593,295 - ABIE41_RS07760 0.76 -0.1
1,593,399 + ABIE41_RS07760 0.87 -0.5
1,593,399 + ABIE41_RS07760 0.87 +0.4
1,593,399 + ABIE41_RS07760 0.87 +0.7
1,593,400 - ABIE41_RS07760 0.87 -0.4
1,593,595 + +0.6
1,593,596 - -3.2
1,593,596 - +0.1
1,593,596 - -0.1
1,593,671 + ABIE41_RS07765 0.12 -0.4
1,593,671 + ABIE41_RS07765 0.12 -0.1
1,593,671 + ABIE41_RS07765 0.12 +0.2
1,593,671 + ABIE41_RS07765 0.12 -0.9
1,593,671 + ABIE41_RS07765 0.12 -1.7
1,593,671 + ABIE41_RS07765 0.12 -0.7
1,593,671 + ABIE41_RS07765 0.12 -0.1
1,593,671 + ABIE41_RS07765 0.12 +0.0
1,593,672 - ABIE41_RS07765 0.12 -0.4
1,593,672 - ABIE41_RS07765 0.12 +0.4
1,593,672 - ABIE41_RS07765 0.12 +0.2
1,593,672 - ABIE41_RS07765 0.12 -1.6
1,593,672 - ABIE41_RS07765 0.12 +1.2
1,593,672 - ABIE41_RS07765 0.12 +0.1
1,593,672 - ABIE41_RS07765 0.12 +0.4
1,593,672 - ABIE41_RS07765 0.12 +0.7
1,593,672 - ABIE41_RS07765 0.12 +0.2
1,593,672 - ABIE41_RS07765 0.12 -0.1
1,593,674 + ABIE41_RS07765 0.13 +0.3
1,593,675 - ABIE41_RS07765 0.13 -1.9
1,593,908 + ABIE41_RS07765 0.60 +0.5
1,593,908 + ABIE41_RS07765 0.60 +0.3
1,593,908 + ABIE41_RS07765 0.60 -0.6
1,593,908 + ABIE41_RS07765 0.60 +0.2
1,593,908 + ABIE41_RS07765 0.60 +0.1
1,593,908 + ABIE41_RS07765 0.60 -0.0
1,593,908 + ABIE41_RS07765 0.60 +0.1
1,593,909 - ABIE41_RS07765 0.61 +0.6
1,593,909 - ABIE41_RS07765 0.61 +0.3
1,593,909 - ABIE41_RS07765 0.61 -0.3
1,594,189 - +0.6
1,594,189 - +0.3
1,594,263 + ABIE41_RS07770 0.10 +1.9
1,594,263 + ABIE41_RS07770 0.10 -0.6
1,594,263 + ABIE41_RS07770 0.10 -0.1
1,594,263 + ABIE41_RS07770 0.10 -2.9
1,594,263 + ABIE41_RS07770 0.10 +1.6
1,594,263 + ABIE41_RS07770 0.10 -0.3
1,594,263 + ABIE41_RS07770 0.10 -0.1
1,594,264 - ABIE41_RS07770 0.10 +2.0
1,594,264 - ABIE41_RS07770 0.10 -2.8
1,594,264 - ABIE41_RS07770 0.10 -1.6
1,594,264 - ABIE41_RS07770 0.10 -0.0
1,594,264 - ABIE41_RS07770 0.10 -0.1
1,594,381 - ABIE41_RS07770 0.18 -0.7
1,594,381 - ABIE41_RS07770 0.18 +0.2
1,594,381 - ABIE41_RS07770 0.18 +0.4
1,594,381 - ABIE41_RS07770 0.18 +0.1
1,594,381 - ABIE41_RS07770 0.18 -0.5
1,594,381 - ABIE41_RS07770 0.18 -0.0
1,594,395 + ABIE41_RS07770 0.19 -0.3
1,594,395 + ABIE41_RS07770 0.19 -1.7
1,594,536 + ABIE41_RS07770 0.28 +0.2
1,594,536 + ABIE41_RS07770 0.28 -0.4
1,594,536 + ABIE41_RS07770 0.28 -1.6
1,594,536 + ABIE41_RS07770 0.28 +1.2
1,594,536 + ABIE41_RS07770 0.28 -0.2
1,594,537 - ABIE41_RS07770 0.28 -0.4
1,594,537 - ABIE41_RS07770 0.28 +2.5
1,594,851 + ABIE41_RS07770 0.49 +0.3
1,594,852 - ABIE41_RS07770 0.49 -0.7
1,594,941 + ABIE41_RS07770 0.55 -1.0
1,594,941 + ABIE41_RS07770 0.55 +1.3
1,594,942 - ABIE41_RS07770 0.55 +0.2
1,594,942 - ABIE41_RS07770 0.55 -1.0
1,594,942 - ABIE41_RS07770 0.55 -1.0

Or see this region's nucleotide sequence