Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06330

Experiment: Ying_AminoAcid20 rep A; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS06320 and ABIE41_RS06325 are separated by 142 nucleotidesABIE41_RS06325 and ABIE41_RS06330 are separated by 291 nucleotidesABIE41_RS06330 and ABIE41_RS06335 are separated by 18 nucleotides ABIE41_RS06320: ABIE41_RS06320 - tetratricopeptide repeat protein, at 1,302,976 to 1,303,641 _RS06320 ABIE41_RS06325: ABIE41_RS06325 - type B 50S ribosomal protein L36, at 1,303,784 to 1,303,909 _RS06325 ABIE41_RS06330: ABIE41_RS06330 - hypothetical protein, at 1,304,201 to 1,304,410 _RS06330 ABIE41_RS06335: ABIE41_RS06335 - GTPase ObgE, at 1,304,429 to 1,305,472 _RS06335 Position (kb) 1304 1305Strain fitness (log2 ratio) -1 0 1at 1303.652 kb on + strandat 1304.150 kb on + strandat 1304.184 kb on - strandat 1304.263 kb on + strand, within ABIE41_RS06330at 1304.264 kb on - strand, within ABIE41_RS06330

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
remove
1,303,652 + -0.9
1,304,150 + +0.4
1,304,184 - -0.4
1,304,263 + ABIE41_RS06330 0.30 -0.1
1,304,264 - ABIE41_RS06330 0.30 -0.3

Or see this region's nucleotide sequence