Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06320

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06315 and ABIE41_RS06320 are separated by 43 nucleotidesABIE41_RS06320 and ABIE41_RS06325 are separated by 142 nucleotidesABIE41_RS06325 and ABIE41_RS06330 are separated by 291 nucleotidesABIE41_RS06330 and ABIE41_RS06335 are separated by 18 nucleotides ABIE41_RS06315: ABIE41_RS06315 - alpha/beta hydrolase, at 1,301,943 to 1,302,932 _RS06315 ABIE41_RS06320: ABIE41_RS06320 - tetratricopeptide repeat protein, at 1,302,976 to 1,303,641 _RS06320 ABIE41_RS06325: ABIE41_RS06325 - type B 50S ribosomal protein L36, at 1,303,784 to 1,303,909 _RS06325 ABIE41_RS06330: ABIE41_RS06330 - hypothetical protein, at 1,304,201 to 1,304,410 _RS06330 ABIE41_RS06335: ABIE41_RS06335 - GTPase ObgE, at 1,304,429 to 1,305,472 _RS06335 Position (kb) 1302 1303 1304Strain fitness (log2 ratio) -2 -1 0 1at 1302.169 kb on - strand, within ABIE41_RS06315at 1302.292 kb on + strand, within ABIE41_RS06315at 1302.293 kb on - strand, within ABIE41_RS06315at 1302.421 kb on + strand, within ABIE41_RS06315at 1302.421 kb on + strand, within ABIE41_RS06315at 1302.421 kb on + strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.422 kb on - strand, within ABIE41_RS06315at 1302.680 kb on - strand, within ABIE41_RS06315at 1302.790 kb on + strand, within ABIE41_RS06315at 1302.825 kb on - strand, within ABIE41_RS06315at 1303.046 kb on + strand, within ABIE41_RS06320at 1303.046 kb on + strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.047 kb on - strand, within ABIE41_RS06320at 1303.136 kb on + strand, within ABIE41_RS06320at 1303.137 kb on - strand, within ABIE41_RS06320at 1303.652 kb on + strandat 1304.150 kb on + strandat 1304.184 kb on - strandat 1304.263 kb on + strand, within ABIE41_RS06330at 1304.264 kb on - strand, within ABIE41_RS06330

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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1,302,169 - ABIE41_RS06315 0.23 -0.3
1,302,292 + ABIE41_RS06315 0.35 +0.5
1,302,293 - ABIE41_RS06315 0.35 +0.5
1,302,421 + ABIE41_RS06315 0.48 -0.5
1,302,421 + ABIE41_RS06315 0.48 -0.2
1,302,421 + ABIE41_RS06315 0.48 -0.8
1,302,422 - ABIE41_RS06315 0.48 +0.1
1,302,422 - ABIE41_RS06315 0.48 -0.0
1,302,422 - ABIE41_RS06315 0.48 +0.6
1,302,422 - ABIE41_RS06315 0.48 -0.5
1,302,422 - ABIE41_RS06315 0.48 -0.2
1,302,422 - ABIE41_RS06315 0.48 -0.0
1,302,680 - ABIE41_RS06315 0.74 -1.3
1,302,790 + ABIE41_RS06315 0.86 +0.1
1,302,825 - ABIE41_RS06315 0.89 +0.1
1,303,046 + ABIE41_RS06320 0.11 +0.6
1,303,046 + ABIE41_RS06320 0.11 -0.5
1,303,047 - ABIE41_RS06320 0.11 -0.3
1,303,047 - ABIE41_RS06320 0.11 -0.9
1,303,047 - ABIE41_RS06320 0.11 -0.6
1,303,047 - ABIE41_RS06320 0.11 -2.3
1,303,136 + ABIE41_RS06320 0.24 +0.2
1,303,137 - ABIE41_RS06320 0.24 +0.2
1,303,652 + -0.9
1,304,150 + +0.4
1,304,184 - -0.4
1,304,263 + ABIE41_RS06330 0.30 -0.1
1,304,264 - ABIE41_RS06330 0.30 -0.3

Or see this region's nucleotide sequence