Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02090 and ABIE41_RS02095 are separated by 200 nucleotides ABIE41_RS02095 and ABIE41_RS02100 are separated by 93 nucleotides
ABIE41_RS02090: ABIE41_RS02090 - hypothetical protein, at 416,736 to 417,014
_RS02090
ABIE41_RS02095: ABIE41_RS02095 - DUF736 domain-containing protein, at 417,215 to 417,538
_RS02095
ABIE41_RS02100: ABIE41_RS02100 - hypothetical protein, at 417,632 to 418,171
_RS02100
Position (kb) 417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 416.305 kb on - strand at 416.305 kb on - strand at 416.443 kb on + strand at 416.444 kb on - strand at 416.572 kb on - strand at 416.855 kb on + strand, within ABIE41_RS02090 at 416.856 kb on - strand, within ABIE41_RS02090 at 416.941 kb on + strand, within ABIE41_RS02090 at 416.942 kb on - strand, within ABIE41_RS02090 at 416.942 kb on - strand, within ABIE41_RS02090 at 417.049 kb on - strand at 417.416 kb on + strand, within ABIE41_RS02095 at 417.416 kb on + strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.417 kb on - strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.461 kb on + strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.462 kb on - strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.494 kb on + strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.495 kb on - strand, within ABIE41_RS02095 at 417.633 kb on + strand at 417.634 kb on - strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.669 kb on + strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.670 kb on - strand at 417.744 kb on - strand, within ABIE41_RS02100 at 417.744 kb on - strand, within ABIE41_RS02100 at 417.752 kb on - strand, within ABIE41_RS02100 at 417.884 kb on - strand, within ABIE41_RS02100 at 417.909 kb on + strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.910 kb on - strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.923 kb on + strand, within ABIE41_RS02100 at 417.924 kb on - strand, within ABIE41_RS02100 at 417.924 kb on - strand, within ABIE41_RS02100 at 418.065 kb on - strand, within ABIE41_RS02100 at 418.105 kb on + strand, within ABIE41_RS02100 at 418.117 kb on + strand, within ABIE41_RS02100 at 418.118 kb on - strand at 418.118 kb on - strand at 418.134 kb on - strand at 418.182 kb on + strand at 418.182 kb on + strand at 418.182 kb on + strand at 418.182 kb on + strand at 418.204 kb on - strand at 418.208 kb on + strand at 418.208 kb on + strand at 418.208 kb on + strand at 418.208 kb on + strand at 418.208 kb on + strand at 418.209 kb on - strand at 418.209 kb on - strand at 418.209 kb on - strand at 418.210 kb on + strand at 418.216 kb on + strand at 418.217 kb on + strand at 418.218 kb on - strand at 418.218 kb on - strand at 418.443 kb on + strand at 418.443 kb on + strand at 418.443 kb on + strand at 418.444 kb on - strand at 418.444 kb on - strand at 418.444 kb on - strand at 418.444 kb on - strand at 418.453 kb on + strand at 418.453 kb on + strand at 418.453 kb on + strand at 418.453 kb on + strand at 418.454 kb on - strand at 418.454 kb on - strand at 418.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 416,305 - +0.0 416,305 - +3.0 416,443 + -2.8 416,444 - +0.1 416,572 - -0.7 416,855 + ABIE41_RS02090 0.43 +3.2 416,856 - ABIE41_RS02090 0.43 -1.6 416,941 + ABIE41_RS02090 0.73 +0.9 416,942 - ABIE41_RS02090 0.74 -0.4 416,942 - ABIE41_RS02090 0.74 +0.5 417,049 - -0.3 417,416 + ABIE41_RS02095 0.62 +0.2 417,416 + ABIE41_RS02095 0.62 -0.2 417,417 - ABIE41_RS02095 0.62 +0.9 417,417 - ABIE41_RS02095 0.62 +1.0 417,417 - ABIE41_RS02095 0.62 -0.2 417,417 - ABIE41_RS02095 0.62 -0.9 417,461 + ABIE41_RS02095 0.76 -0.7 417,461 + ABIE41_RS02095 0.76 -0.3 417,461 + ABIE41_RS02095 0.76 -1.5 417,461 + ABIE41_RS02095 0.76 -0.1 417,462 - ABIE41_RS02095 0.76 +0.7 417,462 - ABIE41_RS02095 0.76 +0.9 417,462 - ABIE41_RS02095 0.76 +0.7 417,462 - ABIE41_RS02095 0.76 +1.0 417,462 - ABIE41_RS02095 0.76 -0.5 417,494 + ABIE41_RS02095 0.86 +0.5 417,494 + ABIE41_RS02095 0.86 +0.7 417,494 + ABIE41_RS02095 0.86 -1.6 417,494 + ABIE41_RS02095 0.86 -0.8 417,494 + ABIE41_RS02095 0.86 -0.8 417,494 + ABIE41_RS02095 0.86 -1.3 417,494 + ABIE41_RS02095 0.86 +2.0 417,494 + ABIE41_RS02095 0.86 +0.9 417,494 + ABIE41_RS02095 0.86 -0.7 417,494 + ABIE41_RS02095 0.86 +1.3 417,494 + ABIE41_RS02095 0.86 -0.2 417,494 + ABIE41_RS02095 0.86 +0.4 417,494 + ABIE41_RS02095 0.86 -0.0 417,494 + ABIE41_RS02095 0.86 +0.7 417,495 - ABIE41_RS02095 0.86 +0.8 417,495 - ABIE41_RS02095 0.86 +0.8 417,495 - ABIE41_RS02095 0.86 -1.4 417,495 - ABIE41_RS02095 0.86 +0.1 417,495 - ABIE41_RS02095 0.86 +0.1 417,495 - ABIE41_RS02095 0.86 -1.2 417,495 - ABIE41_RS02095 0.86 -0.2 417,633 + -0.2 417,634 - +1.0 417,669 + +1.3 417,669 + -1.0 417,669 + -0.9 417,669 + -1.2 417,669 + +0.0 417,669 + +0.0 417,669 + +1.5 417,669 + +0.4 417,670 - -1.8 417,670 - -0.2 417,670 - +1.0 417,670 - -0.8 417,670 - +0.1 417,670 - -0.7 417,744 - ABIE41_RS02100 0.21 +0.6 417,744 - ABIE41_RS02100 0.21 +2.6 417,752 - ABIE41_RS02100 0.22 -0.7 417,884 - ABIE41_RS02100 0.47 -0.1 417,909 + ABIE41_RS02100 0.51 +0.0 417,910 - ABIE41_RS02100 0.51 -1.6 417,910 - ABIE41_RS02100 0.51 +0.0 417,910 - ABIE41_RS02100 0.51 -1.0 417,910 - ABIE41_RS02100 0.51 +1.6 417,923 + ABIE41_RS02100 0.54 -1.3 417,923 + ABIE41_RS02100 0.54 +0.6 417,923 + ABIE41_RS02100 0.54 -1.7 417,923 + ABIE41_RS02100 0.54 -0.3 417,923 + ABIE41_RS02100 0.54 -2.0 417,923 + ABIE41_RS02100 0.54 -0.0 417,923 + ABIE41_RS02100 0.54 -0.7 417,924 - ABIE41_RS02100 0.54 -0.4 417,924 - ABIE41_RS02100 0.54 -0.4 418,065 - ABIE41_RS02100 0.80 -1.6 418,105 + ABIE41_RS02100 0.88 +2.9 418,117 + ABIE41_RS02100 0.90 +0.9 418,118 - +1.3 418,118 - +0.3 418,134 - -0.1 418,182 + -0.1 418,182 + -0.4 418,182 + -0.5 418,182 + -0.4 418,204 - -0.4 418,208 + -0.1 418,208 + +1.3 418,208 + -0.2 418,208 + +0.3 418,208 + -0.9 418,209 - +1.1 418,209 - +0.5 418,209 - -0.5 418,210 + -0.7 418,216 + +0.2 418,217 + -0.4 418,218 - +0.2 418,218 - +1.6 418,443 + -0.2 418,443 + +1.3 418,443 + -1.5 418,444 - -0.3 418,444 - -2.3 418,444 - -1.4 418,444 - +0.4 418,453 + +1.7 418,453 + -1.0 418,453 + +0.8 418,453 + -0.2 418,454 - +1.1 418,454 - +2.3 418,454 - +0.1
Or see this region's nucleotide sequence