Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01930 and ABIE41_RS01935 are separated by 85 nucleotides ABIE41_RS01935 and ABIE41_RS01940 are separated by 3 nucleotides ABIE41_RS01940 and ABIE41_RS01945 are separated by 78 nucleotides ABIE41_RS01945 and ABIE41_RS01950 are separated by 67 nucleotides
ABIE41_RS01930: ABIE41_RS01930 - 8-oxoguanine deaminase, at 389,341 to 390,675
_RS01930
ABIE41_RS01935: ABIE41_RS01935 - hypothetical protein, at 390,761 to 391,012
_RS01935
ABIE41_RS01940: ABIE41_RS01940 - MarR family winged helix-turn-helix transcriptional regulator, at 391,016 to 391,531
_RS01940
ABIE41_RS01945: ABIE41_RS01945 - precorrin-6A synthase (deacetylating), at 391,610 to 392,359
_RS01945
ABIE41_RS01950: ABIE41_RS01950 - VOC family protein, at 392,427 to 393,209
_RS01950
Position (kb) 391
392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 390.052 kb on + strand, within ABIE41_RS01930 at 390.052 kb on + strand, within ABIE41_RS01930 at 390.052 kb on + strand, within ABIE41_RS01930 at 390.052 kb on + strand, within ABIE41_RS01930 at 390.053 kb on - strand, within ABIE41_RS01930 at 390.053 kb on - strand, within ABIE41_RS01930 at 390.053 kb on - strand, within ABIE41_RS01930 at 390.053 kb on - strand, within ABIE41_RS01930 at 390.067 kb on + strand, within ABIE41_RS01930 at 390.067 kb on + strand, within ABIE41_RS01930 at 390.067 kb on + strand, within ABIE41_RS01930 at 390.067 kb on + strand, within ABIE41_RS01930 at 390.067 kb on + strand, within ABIE41_RS01930 at 390.068 kb on - strand, within ABIE41_RS01930 at 390.068 kb on - strand, within ABIE41_RS01930 at 390.211 kb on - strand, within ABIE41_RS01930 at 390.211 kb on - strand, within ABIE41_RS01930 at 390.361 kb on + strand, within ABIE41_RS01930 at 390.487 kb on + strand, within ABIE41_RS01930 at 390.667 kb on + strand at 390.845 kb on - strand, within ABIE41_RS01935 at 390.971 kb on + strand, within ABIE41_RS01935 at 390.971 kb on + strand, within ABIE41_RS01935 at 390.981 kb on - strand, within ABIE41_RS01935 at 390.981 kb on - strand, within ABIE41_RS01935 at 390.998 kb on + strand at 390.999 kb on - strand at 390.999 kb on - strand at 390.999 kb on - strand at 390.999 kb on - strand at 390.999 kb on - strand at 391.183 kb on - strand, within ABIE41_RS01940 at 391.183 kb on - strand, within ABIE41_RS01940 at 391.401 kb on + strand, within ABIE41_RS01940 at 391.402 kb on - strand, within ABIE41_RS01940 at 391.402 kb on - strand, within ABIE41_RS01940 at 391.402 kb on - strand, within ABIE41_RS01940 at 391.453 kb on - strand, within ABIE41_RS01940 at 391.590 kb on + strand at 391.590 kb on + strand at 391.590 kb on + strand at 391.590 kb on + strand at 391.591 kb on - strand at 391.591 kb on - strand at 391.611 kb on + strand at 391.611 kb on + strand at 391.611 kb on + strand at 391.612 kb on - strand at 391.612 kb on - strand at 392.391 kb on + strand at 392.391 kb on + strand at 392.391 kb on + strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 390,052 + ABIE41_RS01930 0.53 +2.3 390,052 + ABIE41_RS01930 0.53 -1.7 390,052 + ABIE41_RS01930 0.53 +0.1 390,052 + ABIE41_RS01930 0.53 -0.6 390,053 - ABIE41_RS01930 0.53 +0.2 390,053 - ABIE41_RS01930 0.53 -2.2 390,053 - ABIE41_RS01930 0.53 -0.0 390,053 - ABIE41_RS01930 0.53 -0.2 390,067 + ABIE41_RS01930 0.54 +1.1 390,067 + ABIE41_RS01930 0.54 -0.5 390,067 + ABIE41_RS01930 0.54 -0.3 390,067 + ABIE41_RS01930 0.54 +0.6 390,067 + ABIE41_RS01930 0.54 +0.8 390,068 - ABIE41_RS01930 0.54 +0.7 390,068 - ABIE41_RS01930 0.54 -1.2 390,211 - ABIE41_RS01930 0.65 -1.9 390,211 - ABIE41_RS01930 0.65 +0.5 390,361 + ABIE41_RS01930 0.76 +0.0 390,487 + ABIE41_RS01930 0.86 +0.0 390,667 + -0.5 390,845 - ABIE41_RS01935 0.33 -1.5 390,971 + ABIE41_RS01935 0.83 +2.0 390,971 + ABIE41_RS01935 0.83 -0.4 390,981 - ABIE41_RS01935 0.87 -0.3 390,981 - ABIE41_RS01935 0.87 +0.8 390,998 + -0.8 390,999 - -0.4 390,999 - -0.2 390,999 - +0.9 390,999 - -1.0 390,999 - +0.1 391,183 - ABIE41_RS01940 0.32 -0.3 391,183 - ABIE41_RS01940 0.32 -1.1 391,401 + ABIE41_RS01940 0.75 +0.3 391,402 - ABIE41_RS01940 0.75 +0.3 391,402 - ABIE41_RS01940 0.75 -1.2 391,402 - ABIE41_RS01940 0.75 +0.2 391,453 - ABIE41_RS01940 0.85 +0.3 391,590 + -0.4 391,590 + -1.0 391,590 + -2.0 391,590 + +0.7 391,591 - -1.6 391,591 - -0.7 391,611 + -0.5 391,611 + +0.3 391,611 + -1.2 391,612 - +0.2 391,612 - -0.0 392,391 + -2.1 392,391 + -2.0 392,391 + +0.4 392,392 - +0.4 392,392 - -0.0 392,392 - +1.5 392,392 - +0.5 392,392 - -1.6 392,392 - -0.2
Or see this region's nucleotide sequence