Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01230 and ABIE41_RS01235 are separated by 500 nucleotides ABIE41_RS01235 and ABIE41_RS01240 are separated by 75 nucleotides ABIE41_RS01240 and ABIE41_RS01245 overlap by 11 nucleotides
ABIE41_RS01230: ABIE41_RS01230 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 245,126 to 248,056
_RS01230
ABIE41_RS01235: ABIE41_RS01235 - hypothetical protein, at 248,557 to 248,826
_RS01235
ABIE41_RS01240: ABIE41_RS01240 - DNA-3-methyladenine glycosylase, at 248,902 to 249,561
_RS01240
ABIE41_RS01245: ABIE41_RS01245 - CinA family protein, at 249,551 to 250,111
_RS01245
Position (kb) 248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 247.825 kb on - strand at 248.173 kb on - strand at 248.277 kb on + strand at 248.277 kb on + strand at 248.277 kb on + strand at 248.278 kb on - strand at 248.278 kb on - strand at 248.278 kb on - strand at 248.278 kb on - strand at 248.278 kb on - strand at 248.907 kb on + strand at 249.064 kb on + strand, within ABIE41_RS01240 at 249.064 kb on + strand, within ABIE41_RS01240 at 249.065 kb on - strand, within ABIE41_RS01240 at 249.065 kb on - strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.148 kb on + strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.149 kb on - strand, within ABIE41_RS01240 at 249.163 kb on + strand, within ABIE41_RS01240 at 249.163 kb on + strand, within ABIE41_RS01240 at 249.163 kb on + strand, within ABIE41_RS01240 at 249.163 kb on + strand, within ABIE41_RS01240 at 249.164 kb on - strand, within ABIE41_RS01240 at 249.164 kb on - strand, within ABIE41_RS01240 at 249.649 kb on + strand, within ABIE41_RS01245 at 249.649 kb on + strand, within ABIE41_RS01245 at 249.649 kb on + strand, within ABIE41_RS01245 at 249.650 kb on - strand, within ABIE41_RS01245 at 249.740 kb on + strand, within ABIE41_RS01245 at 249.740 kb on + strand, within ABIE41_RS01245 at 249.740 kb on + strand, within ABIE41_RS01245 at 249.740 kb on + strand, within ABIE41_RS01245 at 249.740 kb on + strand, within ABIE41_RS01245 at 249.741 kb on - strand, within ABIE41_RS01245 at 249.741 kb on - strand, within ABIE41_RS01245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 247,825 - -1.1 248,173 - +0.4 248,277 + +0.2 248,277 + +0.1 248,277 + -1.4 248,278 - +0.1 248,278 - -0.2 248,278 - -1.8 248,278 - +0.4 248,278 - -0.6 248,907 + +1.0 249,064 + ABIE41_RS01240 0.25 -2.3 249,064 + ABIE41_RS01240 0.25 -1.7 249,065 - ABIE41_RS01240 0.25 +1.0 249,065 - ABIE41_RS01240 0.25 +0.1 249,148 + ABIE41_RS01240 0.37 -1.2 249,148 + ABIE41_RS01240 0.37 +0.9 249,148 + ABIE41_RS01240 0.37 -0.6 249,148 + ABIE41_RS01240 0.37 +0.1 249,148 + ABIE41_RS01240 0.37 -0.7 249,148 + ABIE41_RS01240 0.37 -0.6 249,148 + ABIE41_RS01240 0.37 -1.2 249,148 + ABIE41_RS01240 0.37 -0.8 249,148 + ABIE41_RS01240 0.37 -0.3 249,148 + ABIE41_RS01240 0.37 -0.1 249,148 + ABIE41_RS01240 0.37 +1.6 249,149 - ABIE41_RS01240 0.37 +1.8 249,149 - ABIE41_RS01240 0.37 +1.1 249,149 - ABIE41_RS01240 0.37 +0.0 249,149 - ABIE41_RS01240 0.37 -0.3 249,149 - ABIE41_RS01240 0.37 +0.0 249,149 - ABIE41_RS01240 0.37 +0.2 249,149 - ABIE41_RS01240 0.37 +0.0 249,149 - ABIE41_RS01240 0.37 -0.4 249,149 - ABIE41_RS01240 0.37 +0.4 249,163 + ABIE41_RS01240 0.40 -0.2 249,163 + ABIE41_RS01240 0.40 -0.9 249,163 + ABIE41_RS01240 0.40 -0.3 249,163 + ABIE41_RS01240 0.40 +0.4 249,164 - ABIE41_RS01240 0.40 -0.3 249,164 - ABIE41_RS01240 0.40 +1.1 249,649 + ABIE41_RS01245 0.17 -0.1 249,649 + ABIE41_RS01245 0.17 -1.2 249,649 + ABIE41_RS01245 0.17 -1.0 249,650 - ABIE41_RS01245 0.18 -0.4 249,740 + ABIE41_RS01245 0.34 -0.2 249,740 + ABIE41_RS01245 0.34 +1.0 249,740 + ABIE41_RS01245 0.34 -1.6 249,740 + ABIE41_RS01245 0.34 +1.8 249,740 + ABIE41_RS01245 0.34 -0.3 249,741 - ABIE41_RS01245 0.34 -0.3 249,741 - ABIE41_RS01245 0.34 -0.7
Or see this region's nucleotide sequence