Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01125

Experiment: Ying_AminoAcid20 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01120 and ABIE41_RS01125 are separated by 614 nucleotidesABIE41_RS01125 and ABIE41_RS01130 overlap by 4 nucleotidesABIE41_RS01130 and ABIE41_RS01135 are separated by 14 nucleotides ABIE41_RS01120: ABIE41_RS01120 - hypothetical protein, at 214,145 to 214,456 _RS01120 ABIE41_RS01125: ABIE41_RS01125 - transketolase family protein, at 215,071 to 216,081 _RS01125 ABIE41_RS01130: ABIE41_RS01130 - transketolase, at 216,078 to 216,920 _RS01130 ABIE41_RS01135: ABIE41_RS01135 - SDR family NAD(P)-dependent oxidoreductase, at 216,935 to 217,687 _RS01135 Position (kb) 215 216 217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 214.083 kb on + strandat 214.083 kb on + strandat 214.084 kb on - strandat 214.084 kb on - strandat 214.084 kb on - strandat 214.084 kb on - strandat 214.084 kb on - strandat 214.084 kb on - strandat 214.084 kb on - strandat 214.094 kb on + strandat 214.095 kb on - strandat 214.149 kb on + strandat 214.149 kb on + strandat 214.150 kb on - strandat 214.166 kb on - strandat 214.260 kb on + strand, within ABIE41_RS01120at 214.260 kb on + strand, within ABIE41_RS01120at 214.260 kb on + strand, within ABIE41_RS01120at 214.260 kb on + strand, within ABIE41_RS01120at 214.260 kb on + strand, within ABIE41_RS01120at 214.261 kb on - strand, within ABIE41_RS01120at 214.261 kb on - strand, within ABIE41_RS01120at 214.261 kb on - strand, within ABIE41_RS01120at 214.261 kb on - strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.337 kb on + strand, within ABIE41_RS01120at 214.338 kb on - strand, within ABIE41_RS01120at 214.338 kb on - strand, within ABIE41_RS01120at 214.338 kb on - strand, within ABIE41_RS01120at 214.433 kb on + strandat 214.436 kb on - strandat 214.569 kb on - strandat 214.569 kb on - strandat 214.640 kb on + strandat 214.710 kb on - strandat 214.710 kb on - strandat 214.727 kb on - strandat 214.743 kb on + strandat 214.743 kb on + strandat 214.744 kb on - strandat 214.744 kb on - strandat 214.744 kb on - strandat 214.744 kb on - strandat 214.744 kb on - strandat 214.802 kb on + strandat 214.802 kb on + strandat 214.803 kb on - strandat 215.124 kb on - strandat 215.483 kb on + strand, within ABIE41_RS01125at 215.484 kb on - strand, within ABIE41_RS01125at 215.490 kb on - strand, within ABIE41_RS01125at 215.532 kb on + strand, within ABIE41_RS01125at 215.532 kb on + strand, within ABIE41_RS01125at 215.532 kb on + strand, within ABIE41_RS01125at 215.533 kb on - strand, within ABIE41_RS01125at 215.533 kb on - strand, within ABIE41_RS01125at 215.533 kb on - strand, within ABIE41_RS01125at 215.534 kb on + strand, within ABIE41_RS01125at 215.534 kb on + strand, within ABIE41_RS01125at 215.534 kb on + strand, within ABIE41_RS01125at 215.534 kb on + strand, within ABIE41_RS01125at 215.534 kb on + strand, within ABIE41_RS01125at 215.534 kb on + strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.535 kb on - strand, within ABIE41_RS01125at 215.669 kb on + strand, within ABIE41_RS01125at 215.669 kb on + strand, within ABIE41_RS01125at 215.670 kb on - strand, within ABIE41_RS01125at 215.706 kb on + strand, within ABIE41_RS01125at 215.706 kb on + strand, within ABIE41_RS01125at 215.706 kb on + strand, within ABIE41_RS01125at 215.706 kb on + strand, within ABIE41_RS01125at 215.707 kb on - strand, within ABIE41_RS01125at 215.707 kb on - strand, within ABIE41_RS01125at 215.707 kb on - strand, within ABIE41_RS01125at 215.707 kb on - strand, within ABIE41_RS01125at 215.750 kb on + strand, within ABIE41_RS01125at 215.751 kb on - strand, within ABIE41_RS01125at 215.751 kb on - strand, within ABIE41_RS01125at 215.751 kb on - strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.777 kb on + strand, within ABIE41_RS01125at 215.778 kb on - strand, within ABIE41_RS01125at 215.778 kb on - strand, within ABIE41_RS01125at 215.778 kb on - strand, within ABIE41_RS01125at 215.778 kb on - strand, within ABIE41_RS01125at 215.778 kb on - strand, within ABIE41_RS01125at 215.862 kb on - strand, within ABIE41_RS01125at 215.906 kb on + strand, within ABIE41_RS01125at 215.906 kb on + strand, within ABIE41_RS01125at 215.906 kb on + strand, within ABIE41_RS01125at 215.906 kb on + strand, within ABIE41_RS01125at 215.907 kb on - strand, within ABIE41_RS01125at 215.907 kb on - strand, within ABIE41_RS01125at 215.907 kb on - strand, within ABIE41_RS01125at 216.481 kb on + strand, within ABIE41_RS01130at 216.481 kb on + strand, within ABIE41_RS01130at 216.482 kb on - strand, within ABIE41_RS01130at 216.536 kb on + strand, within ABIE41_RS01130at 216.536 kb on + strand, within ABIE41_RS01130at 216.537 kb on - strand, within ABIE41_RS01130at 216.537 kb on - strand, within ABIE41_RS01130at 216.537 kb on - strand, within ABIE41_RS01130at 216.537 kb on - strand, within ABIE41_RS01130at 216.584 kb on + strand, within ABIE41_RS01130at 216.584 kb on + strand, within ABIE41_RS01130at 216.585 kb on - strand, within ABIE41_RS01130at 216.585 kb on - strand, within ABIE41_RS01130at 216.586 kb on + strand, within ABIE41_RS01130at 216.586 kb on + strand, within ABIE41_RS01130at 216.587 kb on - strand, within ABIE41_RS01130at 216.631 kb on + strand, within ABIE41_RS01130at 216.631 kb on + strand, within ABIE41_RS01130at 216.631 kb on + strand, within ABIE41_RS01130at 216.631 kb on + strand, within ABIE41_RS01130at 216.632 kb on - strand, within ABIE41_RS01130at 216.632 kb on - strand, within ABIE41_RS01130at 216.632 kb on - strand, within ABIE41_RS01130at 216.632 kb on - strand, within ABIE41_RS01130at 216.632 kb on - strand, within ABIE41_RS01130at 216.632 kb on - strand, within ABIE41_RS01130at 216.697 kb on + strand, within ABIE41_RS01130at 216.698 kb on - strand, within ABIE41_RS01130at 216.757 kb on + strand, within ABIE41_RS01130at 216.775 kb on + strand, within ABIE41_RS01130at 216.775 kb on + strand, within ABIE41_RS01130at 216.776 kb on - strand, within ABIE41_RS01130at 216.776 kb on - strand, within ABIE41_RS01130at 216.820 kb on + strand, within ABIE41_RS01130at 216.820 kb on + strand, within ABIE41_RS01130at 216.820 kb on + strand, within ABIE41_RS01130at 216.820 kb on + strand, within ABIE41_RS01130at 216.821 kb on - strand, within ABIE41_RS01130at 216.896 kb on + strandat 216.896 kb on + strandat 216.987 kb on + strandat 216.988 kb on - strandat 216.988 kb on - strandat 216.988 kb on - strandat 217.017 kb on + strand, within ABIE41_RS01135at 217.017 kb on + strand, within ABIE41_RS01135at 217.018 kb on - strand, within ABIE41_RS01135at 217.018 kb on - strand, within ABIE41_RS01135at 217.018 kb on - strand, within ABIE41_RS01135at 217.018 kb on - strand, within ABIE41_RS01135at 217.018 kb on - strand, within ABIE41_RS01135

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2
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214,083 + +0.6
214,083 + +0.8
214,084 - +0.3
214,084 - -1.7
214,084 - +0.1
214,084 - -1.0
214,084 - -0.1
214,084 - +0.4
214,084 - +0.6
214,094 + -1.8
214,095 - +0.8
214,149 + +0.1
214,149 + +0.2
214,150 - -0.7
214,166 - +1.4
214,260 + ABIE41_RS01120 0.37 +1.7
214,260 + ABIE41_RS01120 0.37 -0.1
214,260 + ABIE41_RS01120 0.37 -0.1
214,260 + ABIE41_RS01120 0.37 +0.9
214,260 + ABIE41_RS01120 0.37 +0.4
214,261 - ABIE41_RS01120 0.37 +0.7
214,261 - ABIE41_RS01120 0.37 -3.8
214,261 - ABIE41_RS01120 0.37 -1.2
214,261 - ABIE41_RS01120 0.37 -0.7
214,337 + ABIE41_RS01120 0.62 -0.5
214,337 + ABIE41_RS01120 0.62 -0.2
214,337 + ABIE41_RS01120 0.62 -2.6
214,337 + ABIE41_RS01120 0.62 -1.6
214,337 + ABIE41_RS01120 0.62 +0.3
214,337 + ABIE41_RS01120 0.62 -0.4
214,337 + ABIE41_RS01120 0.62 +0.1
214,338 - ABIE41_RS01120 0.62 +0.3
214,338 - ABIE41_RS01120 0.62 +1.1
214,338 - ABIE41_RS01120 0.62 -1.4
214,433 + -1.9
214,436 - -0.1
214,569 - -0.9
214,569 - +1.3
214,640 + +0.4
214,710 - +0.6
214,710 - -0.0
214,727 - +0.6
214,743 + -0.9
214,743 + +1.0
214,744 - +0.6
214,744 - -0.6
214,744 - +0.9
214,744 - -0.5
214,744 - +0.9
214,802 + +1.3
214,802 + +0.5
214,803 - -0.2
215,124 - +1.4
215,483 + ABIE41_RS01125 0.41 -1.2
215,484 - ABIE41_RS01125 0.41 -0.4
215,490 - ABIE41_RS01125 0.41 -0.3
215,532 + ABIE41_RS01125 0.46 -0.7
215,532 + ABIE41_RS01125 0.46 -1.4
215,532 + ABIE41_RS01125 0.46 -1.0
215,533 - ABIE41_RS01125 0.46 +1.6
215,533 - ABIE41_RS01125 0.46 -0.8
215,533 - ABIE41_RS01125 0.46 -0.3
215,534 + ABIE41_RS01125 0.46 +0.4
215,534 + ABIE41_RS01125 0.46 -3.8
215,534 + ABIE41_RS01125 0.46 -0.3
215,534 + ABIE41_RS01125 0.46 +0.3
215,534 + ABIE41_RS01125 0.46 +0.1
215,534 + ABIE41_RS01125 0.46 +0.2
215,535 - ABIE41_RS01125 0.46 +0.4
215,535 - ABIE41_RS01125 0.46 -1.8
215,535 - ABIE41_RS01125 0.46 -2.1
215,535 - ABIE41_RS01125 0.46 -2.6
215,535 - ABIE41_RS01125 0.46 +0.5
215,535 - ABIE41_RS01125 0.46 -3.1
215,535 - ABIE41_RS01125 0.46 -0.0
215,669 + ABIE41_RS01125 0.59 +0.5
215,669 + ABIE41_RS01125 0.59 +0.6
215,670 - ABIE41_RS01125 0.59 +0.2
215,706 + ABIE41_RS01125 0.63 -0.1
215,706 + ABIE41_RS01125 0.63 -0.1
215,706 + ABIE41_RS01125 0.63 -0.7
215,706 + ABIE41_RS01125 0.63 +0.0
215,707 - ABIE41_RS01125 0.63 -3.4
215,707 - ABIE41_RS01125 0.63 +0.3
215,707 - ABIE41_RS01125 0.63 +0.2
215,707 - ABIE41_RS01125 0.63 +0.7
215,750 + ABIE41_RS01125 0.67 +0.2
215,751 - ABIE41_RS01125 0.67 -0.9
215,751 - ABIE41_RS01125 0.67 -0.6
215,751 - ABIE41_RS01125 0.67 +0.1
215,777 + ABIE41_RS01125 0.70 +0.2
215,777 + ABIE41_RS01125 0.70 +0.6
215,777 + ABIE41_RS01125 0.70 -1.4
215,777 + ABIE41_RS01125 0.70 +1.3
215,777 + ABIE41_RS01125 0.70 -0.7
215,777 + ABIE41_RS01125 0.70 -0.7
215,777 + ABIE41_RS01125 0.70 -3.3
215,777 + ABIE41_RS01125 0.70 -0.8
215,777 + ABIE41_RS01125 0.70 +0.2
215,777 + ABIE41_RS01125 0.70 -1.5
215,777 + ABIE41_RS01125 0.70 -1.0
215,777 + ABIE41_RS01125 0.70 +0.9
215,777 + ABIE41_RS01125 0.70 +0.5
215,778 - ABIE41_RS01125 0.70 +0.7
215,778 - ABIE41_RS01125 0.70 -0.4
215,778 - ABIE41_RS01125 0.70 -0.2
215,778 - ABIE41_RS01125 0.70 -0.1
215,778 - ABIE41_RS01125 0.70 -0.1
215,862 - ABIE41_RS01125 0.78 -2.2
215,906 + ABIE41_RS01125 0.83 -2.4
215,906 + ABIE41_RS01125 0.83 -1.1
215,906 + ABIE41_RS01125 0.83 -0.1
215,906 + ABIE41_RS01125 0.83 -0.1
215,907 - ABIE41_RS01125 0.83 +0.1
215,907 - ABIE41_RS01125 0.83 +0.1
215,907 - ABIE41_RS01125 0.83 +1.2
216,481 + ABIE41_RS01130 0.48 +0.0
216,481 + ABIE41_RS01130 0.48 -0.6
216,482 - ABIE41_RS01130 0.48 +0.3
216,536 + ABIE41_RS01130 0.54 -0.5
216,536 + ABIE41_RS01130 0.54 -3.3
216,537 - ABIE41_RS01130 0.54 -0.1
216,537 - ABIE41_RS01130 0.54 +0.4
216,537 - ABIE41_RS01130 0.54 -0.5
216,537 - ABIE41_RS01130 0.54 +0.8
216,584 + ABIE41_RS01130 0.60 +0.8
216,584 + ABIE41_RS01130 0.60 -0.3
216,585 - ABIE41_RS01130 0.60 -1.6
216,585 - ABIE41_RS01130 0.60 +0.2
216,586 + ABIE41_RS01130 0.60 -3.3
216,586 + ABIE41_RS01130 0.60 -1.5
216,587 - ABIE41_RS01130 0.60 -0.4
216,631 + ABIE41_RS01130 0.66 +0.4
216,631 + ABIE41_RS01130 0.66 +0.2
216,631 + ABIE41_RS01130 0.66 +0.9
216,631 + ABIE41_RS01130 0.66 -0.6
216,632 - ABIE41_RS01130 0.66 +0.8
216,632 - ABIE41_RS01130 0.66 +0.5
216,632 - ABIE41_RS01130 0.66 -1.4
216,632 - ABIE41_RS01130 0.66 +0.8
216,632 - ABIE41_RS01130 0.66 +1.4
216,632 - ABIE41_RS01130 0.66 +0.3
216,697 + ABIE41_RS01130 0.73 -3.4
216,698 - ABIE41_RS01130 0.74 +0.3
216,757 + ABIE41_RS01130 0.81 -2.0
216,775 + ABIE41_RS01130 0.83 -2.7
216,775 + ABIE41_RS01130 0.83 -0.4
216,776 - ABIE41_RS01130 0.83 -0.4
216,776 - ABIE41_RS01130 0.83 +0.6
216,820 + ABIE41_RS01130 0.88 +0.4
216,820 + ABIE41_RS01130 0.88 +0.2
216,820 + ABIE41_RS01130 0.88 +0.2
216,820 + ABIE41_RS01130 0.88 -2.0
216,821 - ABIE41_RS01130 0.88 +0.5
216,896 + +0.9
216,896 + +0.4
216,987 + -0.7
216,988 - +0.5
216,988 - +0.2
216,988 - +0.1
217,017 + ABIE41_RS01135 0.11 +1.6
217,017 + ABIE41_RS01135 0.11 -2.1
217,018 - ABIE41_RS01135 0.11 +0.2
217,018 - ABIE41_RS01135 0.11 +0.2
217,018 - ABIE41_RS01135 0.11 -0.1
217,018 - ABIE41_RS01135 0.11 -0.1
217,018 - ABIE41_RS01135 0.11 -0.1

Or see this region's nucleotide sequence