Experiment: Ying_all64 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04960 and ABIE41_RS04965 are separated by 112 nucleotides ABIE41_RS04965 and ABIE41_RS04970 are separated by 233 nucleotides ABIE41_RS04970 and ABIE41_RS04975 overlap by 4 nucleotides
ABIE41_RS04960: ABIE41_RS04960 - methyl-accepting chemotaxis protein, at 1,031,177 to 1,033,111
_RS04960
ABIE41_RS04965: ABIE41_RS04965 - aconitate hydratase AcnA, at 1,033,224 to 1,035,923
_RS04965
ABIE41_RS04970: ABIE41_RS04970 - heme ABC exporter ATP-binding protein CcmA, at 1,036,157 to 1,036,777
_RS04970
ABIE41_RS04975: ABIE41_RS04975 - heme exporter protein CcmB, at 1,036,774 to 1,037,442
_RS04975
Position (kb)
1033
1034
1035
1036 Strain fitness (log2 ratio)
-1
0
1 at 1032.228 kb on - strand, within ABIE41_RS04960 at 1032.418 kb on + strand, within ABIE41_RS04960 at 1032.419 kb on - strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.769 kb on + strand, within ABIE41_RS04960 at 1032.770 kb on - strand, within ABIE41_RS04960 at 1035.999 kb on - strand at 1035.999 kb on - strand at 1035.999 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.077 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.079 kb on - strand at 1036.102 kb on - strand at 1036.102 kb on - strand at 1036.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 2 remove 1,032,228 - ABIE41_RS04960 0.54 +0.2 1,032,418 + ABIE41_RS04960 0.64 +0.6 1,032,419 - ABIE41_RS04960 0.64 -0.1 1,032,769 + ABIE41_RS04960 0.82 -0.8 1,032,769 + ABIE41_RS04960 0.82 +1.4 1,032,769 + ABIE41_RS04960 0.82 -0.3 1,032,770 - ABIE41_RS04960 0.82 +0.2 1,035,999 - +0.6 1,035,999 - +1.1 1,035,999 - +0.5 1,036,077 - -0.0 1,036,077 - +0.6 1,036,077 - +0.5 1,036,077 - +0.8 1,036,077 - +0.3 1,036,077 - +0.4 1,036,079 - -0.1 1,036,079 - +0.8 1,036,079 - -0.3 1,036,079 - +0.0 1,036,102 - -0.4 1,036,102 - -0.3 1,036,102 - +0.4
Or see this region's nucleotide sequence